Add code quality workflows for main branch and pull requests (AllenCe…

…llModeling#364)

.github/workflows/code-quality-main.yaml

@@ -0,0 +1,16 @@
+# Same as `code-quality-pr.yaml` but triggered on commit
+# to main branch and runs on all files (instead of only the changed ones)
+
+name: Code Quality On Push
+
+on:
+  push:
+    branches: [main]
+
+jobs:
+  code-quality:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+      - uses: pre-commit/[email protected]

.github/workflows/code-quality-pr.yaml

@@ -0,0 +1,27 @@
+# This workflow finds which files were changed, prints them, and then
+# runs `pre-commit` on those files.
+
+# Inspired by the sktime library:
+# https://github.com/alan-turing-institute/sktime/blob/main/.github/workflows/test.yml
+
+name: Code Quality On PR
+
+on:
+  pull_request:
+    branches: [main, "release/*"]
+
+jobs:
+  code-quality:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+      - id: file_changes
+        uses: trilom/[email protected]
+        with:
+          output: " "
+      - name: List changed files
+        run: echo '${{ steps.file_changes.outputs.files}}'
+      - uses: pre-commit/[email protected]
+        with:
+          extra_args: --files ${{ steps.file_changes.outputs.files}}

.github/workflows/test.yml

@@ -41,7 +41,7 @@ jobs:
         run: |
           pytest -v
 
-  # upload code coverate report
+  # upload code coverage report
   code-coverage:
     runs-on: ubuntu-latest
 
@@ -67,12 +67,3 @@ jobs:
 
       - name: Upload coverage to Codecov
         uses: codecov/codecov-action@v3
-
-  # check code formatting
-  pre-commit:
-    runs-on: ubuntu-latest
-
-    steps:
-      - uses: actions/checkout@v2
-      - uses: actions/setup-python@v2
-      - uses: pre-commit/[email protected]