boolSim-python

This Python module is an interface to the software tools boolSim (https://www.vital-it.ch/research/software/boolSim) for the computation of attractors in synchronous and asynchronous Boolean Networks.

Installation

CoLoMoTo Notebook environment

boolSim-python is distributed as part of the CoLoMoTo docker.

Using conda

conda install -c colomoto boolsim-python

Using pip

pip install boolsim
python -m boolsim_setup

Documentation

Documentation is available at https://boolsim-python.readthedocs.io.

Examples can be found at:

• https://nbviewer.jupyter.org/github/colomoto/boolSim-python/tree/main/examples/.