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Fix error:execution timed out
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@szlaura
szlaura committed Nov 20, 2024
1 parent 1782b5a commit 57f9e58
Showing 1 changed file with 24 additions and 340 deletions.
364 changes: 24 additions & 340 deletions tutorials/PyDrugLogics/pydruglogics_tutorial.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -48,343 +48,15 @@
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"text/plain": [
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]
},
"metadata": {},
"output_type": "display_data"
"ename": "ModuleNotFoundError",
"evalue": "No module named 'pydruglogics'",
"output_type": "error",
"traceback": [
"\u001B[0;31m---------------------------------------------------------------------------\u001B[0m",
"\u001B[0;31mModuleNotFoundError\u001B[0m Traceback (most recent call last)",
"Cell \u001B[0;32mIn[1], line 1\u001B[0m\n\u001B[0;32m----> 1\u001B[0m \u001B[38;5;28;01mimport\u001B[39;00m \u001B[38;5;21;01mpydruglogics\u001B[39;00m\n",
"\u001B[0;31mModuleNotFoundError\u001B[0m: No module named 'pydruglogics'"
]
}
],
"source": [
Expand All @@ -396,7 +68,19 @@
"execution_count": 2,
"id": "0e18a2c6-f896-4fe4-b08d-64335963a2a1",
"metadata": {},
"outputs": [],
"outputs": [
{
"ename": "ModuleNotFoundError",
"evalue": "No module named 'pydruglogics'",
"output_type": "error",
"traceback": [
"\u001B[0;31m---------------------------------------------------------------------------\u001B[0m",
"\u001B[0;31mModuleNotFoundError\u001B[0m Traceback (most recent call last)",
"Cell \u001B[0;32mIn[2], line 1\u001B[0m\n\u001B[0;32m----> 1\u001B[0m \u001B[38;5;28;01mfrom\u001B[39;00m \u001B[38;5;21;01mpydruglogics\u001B[39;00m\u001B[38;5;21;01m.\u001B[39;00m\u001B[38;5;21;01mmodel\u001B[39;00m\u001B[38;5;21;01m.\u001B[39;00m\u001B[38;5;21;01mBooleanModel\u001B[39;00m \u001B[38;5;28;01mimport\u001B[39;00m BooleanModel\n\u001B[1;32m 2\u001B[0m \u001B[38;5;28;01mfrom\u001B[39;00m \u001B[38;5;21;01mpydruglogics\u001B[39;00m\u001B[38;5;21;01m.\u001B[39;00m\u001B[38;5;21;01mmodel\u001B[39;00m\u001B[38;5;21;01m.\u001B[39;00m\u001B[38;5;21;01mInteractionModel\u001B[39;00m \u001B[38;5;28;01mimport\u001B[39;00m InteractionModel\n\u001B[1;32m 3\u001B[0m \u001B[38;5;28;01mfrom\u001B[39;00m \u001B[38;5;21;01mpydruglogics\u001B[39;00m\u001B[38;5;21;01m.\u001B[39;00m\u001B[38;5;21;01minput\u001B[39;00m\u001B[38;5;21;01m.\u001B[39;00m\u001B[38;5;21;01mModelOutputs\u001B[39;00m \u001B[38;5;28;01mimport\u001B[39;00m ModelOutputs\n",
"\u001B[0;31mModuleNotFoundError\u001B[0m: No module named 'pydruglogics'"
]
}
],
"source": [
"from pydruglogics.model.BooleanModel import BooleanModel\n",
"from pydruglogics.model.InteractionModel import InteractionModel\n",
Expand Down Expand Up @@ -2217,7 +1901,7 @@
],
"source": [
"sampling_with_ci(boolean_models=best_boolean_models_calibrated,observed_synergy_scores=observed_synergy_scores, model_outputs=model_outputs, \n",
" perturbations=perturbations,synergy_method='bliss', repeat_time=15, sub_ratio=0.8, boot_n=1000, confidence_level= 0.95, \n",
" perturbations=perturbations,synergy_method='bliss', repeat_time=3, sub_ratio=0.8, boot_n=100, confidence_level= 0.95, \n",
" plot=True, plot_discrete=False, save_result=False, with_seeds=True, seeds=42)"
]
}
Expand All @@ -2238,7 +1922,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.12.2"
"version": "3.11.8"
}
},
"nbformat": 4,
Expand Down

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