Include scBoolSeq tool

Squashed commit of the following: commit ec49a8d96737355d89f48cf30a64856355f7c156 Author: Loïc Paulevé <[email protected]> Date: Fri Oct 20 23:45:44 2023 +0200 scboolseq: pin version commit 6ebbfcf19707ea503157a39a0f3b68b9ee7f2b70 Author: Loïc Paulevé <[email protected]> Date: Fri Oct 20 23:43:51 2023 +0200 scBoolSeq tutorials commit 51c46efd070849050785c66d55ed4f4e0d8c4b53 Author: Loïc Paulevé <[email protected]> Date: Fri Oct 20 23:43:38 2023 +0200 scBoolSeq info commit 01256d7617bee9f082343280e342d524caa5c01f Author: Loïc Paulevé <[email protected]> Date: Fri Oct 20 23:43:16 2023 +0200 install scboolseq
colomoto · Nov 1, 2023 · cd64098 · cd64098
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diff --git a/Dockerfile b/Dockerfile
@@ -155,6 +155,7 @@ RUN AUTO_UPDATE=1 conda install --no-update-deps -y \
         pymaboss=0.8.5=py_0 \
         pypint=1.6.3=py_0 \
         pystablemotifs=3.0.4dev1=py_0 \
+        scboolseq=2.0=py_0 \
     && conda clean -y --all && rm -rf /opt/conda/pkgs
 
 COPY validate.sh /usr/local/bin/

diff --git a/README.md b/README.md
@@ -100,6 +100,7 @@ access to the following softwares:
 | PyBoolNet | https://github.com/hklarner/PyBoolNet | Generation, modification and analysis of Boolean networks | Python module [`PyBoolNet`](https://github.com/hklarner/PyBoolNet)  |
 | pyStableMotifs | https://github.com/jcrozum/pystablemotifs | Target-control of Boolean networks | Python module [`pystablemotifs`](https://github.com/jcrozum/pystablemotifs) |
 | R-BoolNet | https://cran.r-project.org/package=BoolNet | Analysis and reconstruction of Boolean networks dynamics | RPY2 python interface |
+| scBoolSeq | https://github.com/bnediction/scBoolSeq | scRNA-Seq data binarisation and synthetic generation from Boolean dynamics | Python module [`scboolseq`](https://github.com/bnediction/scBoolSeq) |
 
 
 

diff --git a/hooks/release_changes.json b/hooks/release_changes.json
@@ -137,5 +137,10 @@
         "name": "CaSQ",
         "description": "Convert static interaction maps into executable models",
         "release_url": "https://github.com/soli/casq"
+    },
+    "scboolseq": {
+        "name": "scBoolSeq",
+        "description": "scRNA-Seq data binarisation and synthetic generation from Boolean dynamics",
+        "release_url": "https://github.com/bnediction/scBoolSeq/releases/tag/v{}"
     }
 }
diff --git a/tutorials/scBoolSeq/.gitignore b/tutorials/scBoolSeq/.gitignore
@@ -0,0 +1 @@
+*.csv