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#377: Added effective data requirement generation to PlanDefinition p…
…rocessing ... added test
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66 changes: 66 additions & 0 deletions
66
src/main/java/org/opencds/cqf/tooling/plandefinition/PlanDefinitionRefreshProcessor.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,66 @@ | ||
| package org.opencds.cqf.tooling.plandefinition; | ||
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| import org.cqframework.cql.cql2elm.CqlTranslatorOptions; | ||
| import org.cqframework.cql.cql2elm.LibraryManager; | ||
| import org.cqframework.cql.cql2elm.model.TranslatedLibrary; | ||
| import org.cqframework.cql.elm.requirements.fhir.DataRequirementsProcessor; | ||
| import org.hl7.fhir.r5.model.*; | ||
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| import java.util.HashSet; | ||
| import java.util.List; | ||
| import java.util.Set; | ||
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| public class PlanDefinitionRefreshProcessor { | ||
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| public PlanDefinition refreshPlanDefinition(PlanDefinition planToUse, LibraryManager libraryManager, TranslatedLibrary translatedLibrary, CqlTranslatorOptions options) { | ||
| Set<String> expressions = new HashSet<>(); | ||
| if (planToUse.hasAction()) { | ||
| getExpressions(planToUse.getAction(), expressions); | ||
| } | ||
| DataRequirementsProcessor dqReqTrans = new DataRequirementsProcessor(); | ||
| Library moduleDefinitionLibrary = dqReqTrans.gatherDataRequirements(libraryManager, translatedLibrary, options, expressions, true); | ||
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| planToUse.getExtension().removeAll(planToUse.getExtensionsByUrl("http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/cqfm-parameter")); | ||
| planToUse.getExtension().removeAll(planToUse.getExtensionsByUrl("http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/cqfm-dataRequirement")); | ||
| planToUse.getExtension().removeAll(planToUse.getExtensionsByUrl("http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/cqfm-directReferenceCode")); | ||
| planToUse.getExtension().removeAll(planToUse.getExtensionsByUrl("http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/cqfm-logicDefinition")); | ||
| planToUse.getExtension().removeAll(planToUse.getExtensionsByUrl("http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/cqfm-effectiveDataRequirements")); | ||
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| for (Extension extension : moduleDefinitionLibrary.getExtension()) { | ||
| planToUse.addExtension(extension); | ||
| } | ||
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| planToUse.getContained().removeIf(resource -> resource.getId().equalsIgnoreCase("effective-data-requirements")); | ||
| // planToUse.addContained(moduleDefinitionLibrary.setId("effective-data-requirements")); | ||
| // planToUse.addExtension().setUrl("http://hl7.org/fhir/us/cqfmeasures/StructureDefinition/cqfm-effectiveDataRequirements").setValue(new Reference("#effective-data-requirements")).setId("effective-data-requirements"); | ||
| return planToUse; | ||
| } | ||
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| private void getExpressions(List<PlanDefinition.PlanDefinitionActionComponent> actions, Set<String> expressions) { | ||
| for (PlanDefinition.PlanDefinitionActionComponent action : actions) { | ||
| if (action.hasCondition()) { | ||
| for (PlanDefinition.PlanDefinitionActionConditionComponent condition : action.getCondition()) { | ||
| if (condition.hasKind() && condition.getKind() == Enumerations.ActionConditionKind.APPLICABILITY | ||
| && condition.hasExpression() && isExpressionIdentifier(condition.getExpression())) { | ||
| expressions.add(condition.getExpression().getExpression()); | ||
| } | ||
| } | ||
| } | ||
| if (action.hasDynamicValue()) { | ||
| for (PlanDefinition.PlanDefinitionActionDynamicValueComponent dynamicValue : action.getDynamicValue()) { | ||
| if (dynamicValue.hasExpression() && isExpressionIdentifier(dynamicValue.getExpression())) { | ||
| expressions.add(dynamicValue.getExpression().getExpression()); | ||
| } | ||
| } | ||
| } | ||
| if (action.hasAction()) { | ||
| getExpressions(action.getAction(), expressions); | ||
| } | ||
| } | ||
| } | ||
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| private boolean isExpressionIdentifier(Expression expression) { | ||
| return expression.hasLanguage() && expression.hasExpression() && (expression.getLanguage().equalsIgnoreCase("text/cql.identifier") || expression.getLanguage().equalsIgnoreCase("text/cql")); | ||
| } | ||
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| } |
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77 changes: 77 additions & 0 deletions
77
...st/java/org/opencds/cqf/tooling/plandefinition/r4/PlanDefinitionRefreshProcessorTest.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,77 @@ | ||
| package org.opencds.cqf.tooling.plandefinition.r4; | ||
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| import ca.uhn.fhir.context.FhirContext; | ||
| import ca.uhn.fhir.parser.JsonParser; | ||
| import ca.uhn.fhir.parser.LenientErrorHandler; | ||
| import ca.uhn.fhir.parser.XmlParser; | ||
| import org.cqframework.cql.cql2elm.*; | ||
| import org.cqframework.cql.cql2elm.model.TranslatedLibrary; | ||
| import org.hl7.elm.r1.VersionedIdentifier; | ||
| import org.hl7.fhir.instance.model.api.IBaseResource; | ||
| import org.hl7.fhir.r5.model.PlanDefinition; | ||
| import org.opencds.cqf.tooling.plandefinition.PlanDefinitionRefreshProcessor; | ||
| import org.opencds.cqf.tooling.utilities.CanonicalUtils; | ||
| import org.opencds.cqf.tooling.utilities.IOUtils; | ||
| import org.testng.annotations.Test; | ||
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| import java.nio.file.Path; | ||
| import java.util.ArrayList; | ||
| import java.util.Arrays; | ||
| import java.util.List; | ||
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| public class PlanDefinitionRefreshProcessorTest { | ||
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| public static final String separator = System.getProperty("file.separator"); | ||
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| @Test | ||
| public void refreshPlanDefinition() { | ||
| String libraryDirectoryPath = "/Users/christopherschuler/Documents/workspace/alphora/cqf-tooling/src/test/resources/org/opencds/cqf/tooling/r4/input/resources/library"; | ||
| String plandefinitionDirectoryPath = "/Users/christopherschuler/Documents/workspace/alphora/cqf-tooling/src/test/resources/org/opencds/cqf/tooling/r4/input/resources/plandefinition"; | ||
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| List<IBaseResource> resources = IOUtils.readResources( | ||
| Arrays.asList( | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC01.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC02.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC03.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC04.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC04PatientView.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC05.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC06.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC07.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC08.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC08OrderSign.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC09.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC10.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC10OrderSign.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC10PatientView.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC11.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC11PatientView.xml", | ||
| plandefinitionDirectoryPath + separator + "plandefinition-OpioidCDSREC12PatientView.xml" | ||
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| ), FhirContext.forR5() | ||
| ); | ||
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| LibrarySourceProvider sourceProvider = new DefaultLibrarySourceProvider(Path.of(libraryDirectoryPath)); | ||
| LibraryManager libraryManager = new LibraryManager(new ModelManager()); | ||
| libraryManager.getLibrarySourceLoader().registerProvider(sourceProvider); | ||
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| CqlTranslatorOptions options = CqlTranslatorOptions.defaultOptions(); | ||
| VersionedIdentifier identifier; | ||
| TranslatedLibrary translatedLibrary; | ||
| PlanDefinitionRefreshProcessor refreshProcessor = new PlanDefinitionRefreshProcessor(); | ||
| for(IBaseResource plan : resources) { | ||
| PlanDefinition planDef = (PlanDefinition) plan; | ||
| identifier = new VersionedIdentifier().withId(CanonicalUtils.getId(planDef.getLibrary().get(0).getValue())); | ||
| translatedLibrary = libraryManager.resolveLibrary(identifier, options, new ArrayList<>()); | ||
| PlanDefinition refreshedPlan = refreshProcessor.refreshPlanDefinition(planDef, libraryManager, translatedLibrary, options); | ||
| IOUtils.writeResource(refreshedPlan, "/Users/christopherschuler/Documents/workspace/scratch", IOUtils.Encoding.JSON, FhirContext.forR5()); | ||
| } | ||
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| // String resource = new XmlParser(FhirContext.forR5(), new LenientErrorHandler()).setPrettyPrint(true).encodeResourceToString(refreshedPlan); | ||
| // String resource = new JsonParser(FhirContext.forR5(), new LenientErrorHandler()).setPrettyPrint(true).encodeResourceToString(refreshedPlan); | ||
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| String s = ""; | ||
| } | ||
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| } |
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