Merge pull request #53 from Fattigman/update-cellranger

New cellranger version 7.2.0

singularity/cellranger.v7.2.0

@@ -0,0 +1,32 @@
+Bootstrap:docker
+From:nfcore/base
+
+%labels
+	MAINTAINER Jacob Karlstrom <[email protected]>
+	DESCRIPTION Singularity container Cellranger-v7.2.0
+
+%environment
+	PATH=/opt/bin:/opt/conda/envs/ngs-tools/bin/:/opt/cellranger-7.2.0:/opt/bin:$PATH
+
+%post
+	rm -rf /var/lib/apt/lists/*
+	apt -y clean
+	apt -y update
+	apt -y install libz-dev build-essential gettext cmake libxml2-dev libcurl4-openssl-dev libssl-dev make libbz2-dev libboost-dev python3-pip sudo unzip
+
+	mkdir -p /usr/share/man/man1
+
+	sudo apt -y install default-jre
+
+	mkdir -p /opt/bin
+
+
+	# WGET CELLRANGER v7.2.0
+	cd /opt
+	wget -O cellranger-7.2.0.tar.gz "https://cf.10xgenomics.com/releases/cell-exp/cellranger-7.2.0.tar.gz?Expires=1698959834&Key-Pair-Id=APKAI7S6A5RYOXBWRPDA&Signature=UQ~e06XfEh2bSVcFuF75dd7~0cpC7SyULZA6qtYvYpgtKbMUnymxyvFmd-nzP3ZRInM3eBJLbR1m3Sg~rbTJhyv-ywyvfANTUKomvW0Mwzy3Udd~CXbu-2NOE~mVN9~IExXNlViFbiUF4~qkAzUZOAlVWwt8Fq45L46bjskcVm7dwILKZL32gGUjVU~qu7sKbpCmZJDWUVT6tbiqdVt2K9QfQqENvfsbbAAMAqVLx3jZ20AKo2it7FdmJcYB6Q3uwM7ChbhZq~HCVKqSKzF-V4VRmxC1Thc-Vjv5HzWEvsmq9~-SDB-4KN-nH7E-GBmrWWDFNu7KsoL5pMbWxvyaSA__"
+
+	# TAR CELLRANGER v7.2.0
+	tar -zxvf cellranger-7.2.0.tar.gz
+
+
+	cd -

templates/manifest.html

@@ -112,7 +112,7 @@
       <div class="block-item">
         <h1><b>Nextflow manifest</b></h1>
         <br>
-        <p> <b>Pipeline release:</b> 1.6.2</p>
+        <p> <b>Pipeline release:</b> 1.6.3</p>
         <p> <b>Subworkflow:</b> xxSubWorkflowxx</p>
         <p> <b> Maintainer:</b> [email protected]</p>
         <p> <b>Description:</b> Your data has been processed by the nextflow pipeline singleCellWorkflows. If you want more information on how your data was processed, follow the link below and navigate to your release!</p>
@@ -133,8 +133,8 @@ <h1>
           <tbody>
             <tr>
               <td>cellranger</td>
-              <td>7.1.0</td>
-              <td>December 7, 2022</td>
+              <td>7.2.0</td>
+              <td>September 13, 2023</td>
             </tr>
             <tr>
               <td>cellranger-arc</td>
@@ -167,7 +167,7 @@ <h1>
         <a href="https://github.com/ctg-lund/singleCellWorkflows/tree/master">
             <button class="btn github" data-provider="github"><i class="fab fa-github"></i><span>GitHub</span></button>
         </a>
-        <a href="https://github.com/ctg-lund/singleCellWorkflows/archive/refs/tags/v1.6.2.tar.gz">
+        <a href="https://github.com/ctg-lund/singleCellWorkflows/archive/refs/tags/v1.6.3.tar.gz">
           <button class="btn twitter" data-provider="twitter"><i class="fab "></i><span>Download pipeline release</span></button>
       </a>
       </div>