do not sync stage runs

[henningonsbring]

Background

At the end of the pipeline data is synced

Problem/Issue

If we run analyses on stage we do not want data to be synced

What have I done

Only run sync if analyses are done in the production environment

Check list

I have:

• Tested with Stub run
• Tested on our HPC

[henningonsbring]

You get an e-mail when running with the prod profile:
/projects/fs1/shared/external-tools/nextflow/latest/nextflow run /projects/fs1/shared/Development_Github/singleCellWorkflows -bg -profile standard,prod --samplesheet /projects/fs1/shared/Jobs/2023_180/2023_180_SampleSheet.csv > /projects/fs1/shared/Logs/Singlecell/2023_180_started231027_112233.log

While when you run with the stage profile there is no delivery e-mail sent:
/projects/fs1/shared/external-tools/nextflow/latest/nextflow run /projects/fs1/shared/Development_Github/singleCellWorkflows -bg -profile standard,stage --samplesheet /projects/fs1/stage_shared/Jobs/2023_180/2023_180_SampleSheet.csv > /projects/fs1/stage_shared/Logs/Singlecell/2023_180_started231027_112233.log