Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
2Dpattern_frequency.py		2Dpattern_frequency.py
40_DNase_to_BED_file.py		40_DNase_to_BED_file.py
BED.py		BED.py
BED_MACS.py		BED_MACS.py
BLOCoutput2bedgraph.py		BLOCoutput2bedgraph.py
Background_island_calculation.py		Background_island_calculation.py
Background_island_probscore_statistics.py		Background_island_probscore_statistics.py
Background_island_statistics.py		Background_island_statistics.py
Background_simulation.py		Background_simulation.py
Background_simulation_pr.py		Background_simulation_pr.py
DNase_motifscan.py		DNase_motifscan.py
DNase_peak_index_among_samples.py		DNase_peak_index_among_samples.py
DNasepeak_expression_correlation.py		DNasepeak_expression_correlation.py
DNasepeak_expression_correlation_1gene.py		DNasepeak_expression_correlation_1gene.py
DNasepeak_expression_correlation_both_rpkm.py		DNasepeak_expression_correlation_both_rpkm.py
DNasepeak_expression_correlation_kendalltau.py		DNasepeak_expression_correlation_kendalltau.py
DNasepeak_expression_correlation_sqrt.py		DNasepeak_expression_correlation_sqrt.py
DNasepeaksqrtRPKM_expression_correlation.py		DNasepeaksqrtRPKM_expression_correlation.py
Find_overlap_windows.py		Find_overlap_windows.py
FragSizeEstimation.py		FragSizeEstimation.py
GC_from_fasta.py		GC_from_fasta.py
GSM552233_2bed.py		GSM552233_2bed.py
GSM552241_2bed.py		GSM552241_2bed.py
GenomeData.py		GenomeData.py
PAcalls_filter.py		PAcalls_filter.py
PE_2Dmap_data_resursion_to_h.py		PE_2Dmap_data_resursion_to_h.py
PE_2Dmap_density.py		PE_2Dmap_density.py
PE_2Dmap_model_regression_data.py		PE_2Dmap_model_regression_data.py
PE_2Dmap_model_regression_data_+1.py		PE_2Dmap_model_regression_data_+1.py
PE_2Dmap_model_regression_data_-1.py		PE_2Dmap_model_regression_data_-1.py
README.md		README.md
Runx1_2_fa.py		Runx1_2_fa.py
SeparateByChrom.py		SeparateByChrom.py
UCSC.py		UCSC.py
UCSC_genes_manipulation.py		UCSC_genes_manipulation.py
add_2_columns.py		add_2_columns.py
add_abs.py		add_abs.py
add_chr.py		add_chr.py
add_closest_geneID_to_enhancers.py		add_closest_geneID_to_enhancers.py
add_closest_gene_expression_to_enhancers.py		add_closest_gene_expression_to_enhancers.py
add_color_2_bed.py		add_color_2_bed.py
add_filename_line_numbers.py		add_filename_line_numbers.py
add_length_to_island.py		add_length_to_island.py
add_line_numbers.py		add_line_numbers.py
add_line_numbers_from0.py		add_line_numbers_from0.py
add_pseudo_count.py		add_pseudo_count.py
add_tag_density_to_island.py		add_tag_density_to_island.py
add_word_2_column.py		add_word_2_column.py
add_y_data.py		add_y_data.py
add_y_data_filegroups.py		add_y_data_filegroups.py
add_y_data_non0.py		add_y_data_non0.py
aln2bed.py		aln2bed.py
assign_island_in_domains.py		assign_island_in_domains.py
associate_binary_modification_with_expression.py		associate_binary_modification_with_expression.py
associate_genes_with_intergenic.py		associate_genes_with_intergenic.py
associate_island_with_genes.py		associate_island_with_genes.py
associate_island_with_miRNA.py		associate_island_with_miRNA.py
associate_tags_with_chip_and_control.py		associate_tags_with_chip_and_control.py
associate_tags_with_chip_and_control_log2fc.py		associate_tags_with_chip_and_control_log2fc.py
associate_tags_with_chip_and_control_log2fc_2011.py		associate_tags_with_chip_and_control_log2fc_2011.py
associate_tags_with_chip_and_control_w_fc.py		associate_tags_with_chip_and_control_w_fc.py
associate_tags_with_chip_and_control_w_fc_q.py		associate_tags_with_chip_and_control_w_fc_q.py
associate_tags_with_chip_and_control_w_fc_q_2013.py		associate_tags_with_chip_and_control_w_fc_q_2013.py
associate_tags_with_islands.py		associate_tags_with_islands.py
associate_tags_with_random_background.py		associate_tags_with_random_background.py
associate_tags_with_regions.py		associate_tags_with_regions.py
average_by_column.py		average_by_column.py
average_log_expression_value.py		average_log_expression_value.py
bed2aln.py		bed2aln.py
bed2aln_QuEST.py		bed2aln_QuEST.py
bed2fasta.py		bed2fasta.py
bed2tag.py		bed2tag.py
bed_center_2_ucsc.py		bed_center_2_ucsc.py
bed_center_region_2_bed.py		bed_center_region_2_bed.py
bed_center_region_2_ucsc.py		bed_center_region_2_ucsc.py
bed_intervals.py		bed_intervals.py
bed_preprocessing.py		bed_preprocessing.py
bed_rank_score.py		bed_rank_score.py
bed_score_to_log10.py		bed_score_to_log10.py
binomial_probability.py		binomial_probability.py
bowtie2bed.py		bowtie2bed.py
calc_RPKM.py		calc_RPKM.py
calc_TSS.py		calc_TSS.py
calc_center.py		calc_center.py
calc_std.py		calc_std.py
calculate_average_and_median.py		calculate_average_and_median.py
calculate_correlation.py		calculate_correlation.py
calculate_cross_correlation.py		calculate_cross_correlation.py
calculate_cross_correlation_long_range.py		calculate_cross_correlation_long_range.py
calculate_cross_correlation_long_range_1chrom.py		calculate_cross_correlation_long_range_1chrom.py
calculate_cross_correlation_long_range_1chrom_wo_minus_average.py		calculate_cross_correlation_long_range_1chrom_wo_minus_average.py
calculate_diff-over-sum.py		calculate_diff-over-sum.py
calculate_geogrouped_pearson_correlation.py		calculate_geogrouped_pearson_correlation.py
calculate_grouped_pearson_correlation.py		calculate_grouped_pearson_correlation.py
calculate_grouped_spearman_correlation.py		calculate_grouped_spearman_correlation.py
calculate_normalized_correlation.py		calculate_normalized_correlation.py
calculate_normalized_correlation_10M.py		calculate_normalized_correlation_10M.py
calculate_normalized_correlation_5K-100K.py		calculate_normalized_correlation_5K-100K.py
calculate_pearson_correlation.py		calculate_pearson_correlation.py
calculate_self_correlation.py		calculate_self_correlation.py

Repository files navigation

Modules

all python modules I wrote since 2007

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Repository files navigation

Modules

About

Releases

Packages

Languages

czang/Modules

Folders and files

Latest commit

History

Repository files navigation

Modules

About

Resources

Stars

Watchers

Forks

Releases

Packages 0

Languages

Packages