Update gradle

build.gradle

@@ -84,34 +84,34 @@ jar {
 
 dependencies {
 
-    compile group: 'net.sourceforge.argparse4j', name: 'argparse4j', version: '0.8.1'
-    compile group: 'jline', name: 'jline', version: '2.14.5'
-    compile 'com.github.dariober:Jawk:e5c8f26'
-    compile group: 'com.github.igvteam', name: 'igv', version: 'v2.6.3'
-    compile group: 'log4j', name: 'log4j', version: '1.2.17'
-    compile group: 'com.github.dariober', name: 'htsjdk', version: 'b8f559b9f'
-
-    compile group: 'org.apache.commons', name: 'commons-lang3', version: '3.5'
-    compile group: 'org.apache.commons', name: 'commons-math3', version: '3.6.1'
-    compile group: 'commons-validator', name: 'commons-validator', version: '1.6'
-    compile group: 'commons-io', name: 'commons-io', version: '2.6'
+    implementation group: 'net.sourceforge.argparse4j', name: 'argparse4j', version: '0.8.1'
+    implementation group: 'jline', name: 'jline', version: '2.14.5'
+    implementation 'com.github.dariober:Jawk:e5c8f26'
+    implementation group: 'com.github.igvteam', name: 'igv', version: 'v2.6.3'
+    implementation group: 'log4j', name: 'log4j', version: '1.2.17'
+    implementation group: 'com.github.dariober', name: 'htsjdk', version: 'b8f559b9f'
+
+    implementation group: 'org.apache.commons', name: 'commons-lang3', version: '3.5'
+    implementation group: 'org.apache.commons', name: 'commons-math3', version: '3.6.1'
+    implementation group: 'commons-validator', name: 'commons-validator', version: '1.6'
+    implementation group: 'commons-io', name: 'commons-io', version: '2.6'
 
-    compile group: 'com.esotericsoftware.yamlbeans', name: 'yamlbeans', version: '1.13'
-    compile group: 'com.itextpdf', name: 'itextpdf', version: '5.5.13'
-    compile group: 'com.google.guava', name: 'guava', version: '24.0-android'
-    compile group: 'com.google.code.gson', name: 'gson', version: '2.8.2'
-    compile group: 'org.biojava', name: 'biojava-genome', version: '5.4.0'
-    compile group: 'org.xerial', name: 'sqlite-jdbc', version: '3.21.0.1'
+    implementation group: 'com.esotericsoftware.yamlbeans', name: 'yamlbeans', version: '1.13'
+    implementation group: 'com.itextpdf', name: 'itextpdf', version: '5.5.13'
+    implementation group: 'com.google.guava', name: 'guava', version: '24.0-android'
+    implementation group: 'com.google.code.gson', name: 'gson', version: '2.8.2'
+    implementation group: 'org.biojava', name: 'biojava-genome', version: '5.4.0'
+    implementation group: 'org.xerial', name: 'sqlite-jdbc', version: '3.21.0.1'
 
 	// implementation group: 'com.google.code.gson', name: 'gson', version: '2.10.1'
 
-    testCompile 'junit:junit:4.12'
+    testImplementation 'junit:junit:4.12'
 }
 
-jacocoTestReport {
+jacocoTestReport {jacocoTestReport
     reports {
-        xml.enabled true
-        html.enabled false
+        xml.required = true
+        html.required = false
     }
 }
 

gradle/wrapper/gradle-wrapper.properties

@@ -1,5 +1,6 @@
+#Sat May 11 13:53:38 BST 2024
 distributionBase=GRADLE_USER_HOME
 distributionPath=wrapper/dists
-distributionUrl=https\://services.gradle.org/distributions/gradle-5.2-bin.zip
+distributionUrl=https\://services.gradle.org/distributions/gradle-8.5-bin.zip
 zipStoreBase=GRADLE_USER_HOME
 zipStorePath=wrapper/dists