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add checkinstall section
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jpsmith5 committed Jul 21, 2021
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Expand Up @@ -256,3 +256,15 @@ Optional assets include:
- a region blacklist: e.g. [the ENCODE blacklist](https://github.com/Boyle-Lab/Blacklist)
- a [genomic feature annotation file](annotation.md)

### 5: Confirm installation

After setting up your environment to run `PEPATAC`, you can confirm which means of running the pipeline are now executable using the included `checkinstall` script. This can either be run directly from the `pepatac/` repository:

```console
./checkinstall
```

or from the web:
```console
curl -sSL https://raw.githubusercontent.com/databio/pepatac/checkinstall | bash
```

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