From 9c17e8e903fa015eb955cf4e30509aeedba27798 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 26 Dec 2023 00:11:55 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : 89ee5db8be21c5af68aa88b1f19265c7a2c9e864
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2023-11-01 09:39:44 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : 011951284821ac53cbc2902171d115a6511763e6
Branch  : main
Author  : Benson Muite <bkmgit@users.noreply.github.com>
Time    : 2023-11-01 09:38:10 +0000
Message : Fix broken expansion boxes (#346)

* Fix broken expansion boxes

* Use 'spoiler' rather than 'solution' for the platform-specific upload instructions

* Use contraction `you're` for consistency

---------

Co-authored-by: Paul Smith <paul.j.smith@ucl.ac.uk>
---
 01-introduction.html                  | 21 ++++++-------
 02-the-filesystem.html                | 25 ++++++++-------
 03-working-with-files.html            | 31 +++++++++----------
 04-redirection.html                   | 19 ++++++------
 05-writing-scripts.html               | 27 ++++++++--------
 06-organization.html                  | 19 ++++++------
 404.html                              | 15 +++++----
 CODE_OF_CONDUCT.html                  | 19 ++++++------
 Extra_lesson.html                     | 19 ++++++------
 LICENSE.html                          | 19 ++++++------
 aio.html                              | 44 ++++++++++++++-------------
 discuss.html                          | 19 ++++++------
 etherpad_template.html                | 19 ++++++------
 images.html                           | 16 +++++-----
 index.html                            |  7 +++--
 instructor-notes.html                 | 16 +++++-----
 instructor/01-introduction.html       | 21 ++++++-------
 instructor/02-the-filesystem.html     | 25 ++++++++-------
 instructor/03-working-with-files.html | 31 +++++++++----------
 instructor/04-redirection.html        | 19 ++++++------
 instructor/05-writing-scripts.html    | 27 ++++++++--------
 instructor/06-organization.html       | 19 ++++++------
 instructor/404.html                   | 15 +++++----
 instructor/CODE_OF_CONDUCT.html       | 19 ++++++------
 instructor/Extra_lesson.html          | 19 ++++++------
 instructor/LICENSE.html               | 19 ++++++------
 instructor/aio.html                   | 44 ++++++++++++++-------------
 instructor/discuss.html               | 19 ++++++------
 instructor/etherpad_template.html     | 19 ++++++------
 instructor/images.html                | 16 +++++-----
 instructor/index.html                 |  7 +++--
 instructor/instructor-notes.html      | 16 +++++-----
 instructor/key-points.html            | 16 +++++-----
 instructor/profiles.html              | 21 ++++++-------
 instructor/reference.html             | 19 ++++++------
 key-points.html                       | 16 +++++-----
 pkgdown.yml                           |  2 +-
 profiles.html                         | 21 ++++++-------
 reference.html                        | 19 ++++++------
 39 files changed, 391 insertions(+), 393 deletions(-)

diff --git a/01-introduction.html b/01-introduction.html
index d8b282bf..2f284227 100644
--- a/01-introduction.html
+++ b/01-introduction.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlushcurrent">
   <div class="accordion-item">
@@ -577,7 +575,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb14">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -752,7 +750,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -765,6 +763,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/01-introduction.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
   "keywords": "software, data, lesson, The Carpentries",
@@ -774,7 +773,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/shell-genomics/01-introduction.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-08-15",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/02-the-filesystem.html b/02-the-filesystem.html
index 7d6d0204..48c2a8b3 100644
--- a/02-the-filesystem.html
+++ b/02-the-filesystem.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -401,7 +399,7 @@ <h3 class="callout-title">Finding hidden directories<a class="anchor" aria-label
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>First use the <code>man</code> command to look at the options for
 <code>ls</code>.</p>
@@ -504,7 +502,7 @@ <h3 class="callout-title">Navigating practice<a class="anchor" aria-label="ancho
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb21">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -611,7 +609,7 @@ <h3 class="callout-title">Relative path resolution<a class="anchor" aria-label="
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>No: there <em>is</em> a directory <code>backup</code> in
 <code>/Users</code>.</li>
@@ -722,7 +720,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -735,6 +733,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/02-the-filesystem.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
   "keywords": "software, data, lesson, The Carpentries",
@@ -744,7 +743,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/shell-genomics/02-the-filesystem.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/03-working-with-files.html b/03-working-with-files.html
index 52cec3c4..40ff7f57 100644
--- a/03-working-with-files.html
+++ b/03-working-with-files.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -395,7 +393,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><code>ls /usr/bin/c*</code></li>
 <li><code>ls /usr/bin/*a*</code></li>
@@ -445,7 +443,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb10">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -534,7 +532,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <p>First type <code>history</code>. Then use <code>!</code> followed by
 the line number to rerun that command.</p>
@@ -580,7 +578,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>The last line of the file is
 <code>C:CCC::CCCCCCCC&lt;8?6A:C28C&lt;608'&amp;&amp;&amp;,'$</code>.</li>
@@ -651,7 +649,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5">Show me the solution</h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <p><code>CAC</code></p>
 </div>
@@ -1000,7 +998,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution6" aria-expanded="false" aria-controls="collapseSolution6">
   <h4 class="accordion-header" id="headingSolution6">Show me the solution</h4>
 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><code>rm -r backup</code></li>
 <li>
@@ -1082,7 +1080,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -1095,6 +1093,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/03-working-with-files.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
   "keywords": "software, data, lesson, The Carpentries",
@@ -1104,7 +1103,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/shell-genomics/03-working-with-files.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/04-redirection.html b/04-redirection.html
index 6eb2d621..eb9bbc66 100644
--- a/04-redirection.html
+++ b/04-redirection.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -1136,7 +1134,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -1149,6 +1147,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/04-redirection.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -1158,7 +1157,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "identifier": "https://datacarpentry.github.io/shell-genomics/04-redirection.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/05-writing-scripts.html b/05-writing-scripts.html
index e3ad2d39..e1d46938 100644
--- a/05-writing-scripts.html
+++ b/05-writing-scripts.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -434,7 +432,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
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 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Use <code>nano README.txt</code> to open the file.<br>
 Add today’s date and then use <kbd>Ctrl</kbd>-<kbd>X</kbd> followed by
@@ -524,7 +522,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
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 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <pre><code>$ bash bad-reads-script.sh
 Script finished!</code></pre>
@@ -695,7 +693,7 @@ <h3 id="moving-files-between-your-laptop-and-your-instance">Moving files between
   <h3 class="accordion-header" id="headingSpoiler1">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>SCP</h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <p><code>scp</code> stands for ‘secure copy protocol’, and is a widely
 used UNIX tool for moving files between computers. The simplest way to
@@ -770,7 +768,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler2">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>PCSP</h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <p>If you’re using a Windows PC without Git Bash, we recommend you use
 the <em>PSCP</em> program. This program is from the same suite of tools
@@ -875,7 +873,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -888,6 +886,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/05-writing-scripts.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -897,7 +896,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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   "dateCreated": "2015-03-24",
   "dateModified": "2023-11-01",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
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diff --git a/06-organization.html b/06-organization.html
index 315cc2c3..5684a8d8 100644
--- a/06-organization.html
+++ b/06-organization.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
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                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
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     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -696,7 +694,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -709,6 +707,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/06-organization.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/404.html b/404.html
index d37f0257..bcc24451 100644
--- a/404.html
+++ b/404.html
@@ -131,12 +131,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
                   <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="https://datacarpentry.github.io/shell-genomics/index.html" class="external-link">Summary and Setup</a>
+        <a href="https://datacarpentry.github.io/shell-genomics/index.html" class="external-link">Summary and Setup</a>
     </div>
-    <!--/div.accordion-header-->
+<!--/div.accordion-header-->
+        
   </div>
-  <!--/div.accordion-item-->
+<!--/div.accordion-item-->
 </div>
+
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading2">
@@ -284,7 +286,7 @@ <h1>Page not found</h1>
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-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -297,6 +299,7 @@ <h1>Page not found</h1>
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/404.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -305,8 +308,8 @@ <h1>Page not found</h1>
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   "identifier": "https://datacarpentry.github.io/shell-genomics/404.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 81126360..65b6161d 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -307,7 +305,7 @@ <h1>Contributor Code of Conduct</h1>
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         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -320,6 +318,7 @@ <h1>Contributor Code of Conduct</h1>
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/CODE_OF_CONDUCT.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -329,7 +328,7 @@ <h1>Contributor Code of Conduct</h1>
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   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/Extra_lesson.html b/Extra_lesson.html
index a4bd8146..26c42fde 100644
--- a/Extra_lesson.html
+++ b/Extra_lesson.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -688,7 +686,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -701,6 +699,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/Extra_lesson.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -710,7 +709,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
   "identifier": "https://datacarpentry.github.io/shell-genomics/Extra_lesson.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index 1ef61d37..63d70804 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -358,7 +356,7 @@ <h1>Licenses</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 	<div id="to-top">
@@ -371,6 +369,7 @@ <h1>Licenses</h1>
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/LICENSE.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
   "keywords": "software, data, lesson, The Carpentries",
@@ -380,7 +379,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/shell-genomics/LICENSE.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index 41631425..faafc59b 100644
--- a/aio.html
+++ b/aio.html
@@ -160,14 +160,15 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
+        <a href="index.html">Summary and Setup</a>
     </div>
-    <!--/div.accordion-header-->
+<!--/div.accordion-header-->
+        
   </div>
-  <!--/div.accordion-item-->
+<!--/div.accordion-item-->
 </div>
 <!--/div.accordion-flush-->
 
@@ -616,7 +617,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb14">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -898,7 +899,7 @@ <h3 class="callout-title">Finding hidden directories<a class="anchor" aria-label
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>First use the <code>man</code> command to look at the options for
 <code>ls</code>.</p>
@@ -1002,7 +1003,7 @@ <h3 class="callout-title">Navigating practice<a class="anchor" aria-label="ancho
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb21">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1113,7 +1114,7 @@ <h3 class="callout-title">Relative path resolution<a class="anchor" aria-label="
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>No: there <em>is</em> a directory <code>backup</code> in
@@ -1328,7 +1329,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li><code>ls /usr/bin/c*</code></li>
@@ -1380,7 +1381,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb10">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1472,7 +1473,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <p>First type <code>history</code>. Then use <code>!</code> followed by
 the line number to rerun that command.</p>
@@ -1521,7 +1522,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>The last line of the file is
@@ -1614,7 +1615,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5">Show me the solution</h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <p><code>CAC</code></p>
 </div>
@@ -1990,7 +1991,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution6" aria-expanded="false" aria-controls="collapseSolution6">
   <h4 class="accordion-header" id="headingSolution6">Show me the solution</h4>
 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li><code>rm -r backup</code></li>
@@ -3062,7 +3063,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Use <code>nano README.txt</code> to open the file.<br>
 Add today’s date and then use <kbd>Ctrl</kbd>-<kbd>X</kbd> followed by
@@ -3155,7 +3156,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <pre><code>$ bash bad-reads-script.sh
 Script finished!</code></pre>
@@ -3333,7 +3334,7 @@ <h3 id="moving-files-between-your-laptop-and-your-instance">Moving files between
   <h3 class="accordion-header" id="headingSpoiler1">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>SCP</h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <p><code>scp</code> stands for ‘secure copy protocol’, and is a widely
 used UNIX tool for moving files between computers. The simplest way to
@@ -3410,7 +3411,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler2">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>PCSP</h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <p>If you’re using a Windows PC without Git Bash, we recommend you use
 the <em>PSCP</em> program. This program is from the same suite of tools
@@ -3940,7 +3941,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer>
 </div> <!-- / div.container -->
@@ -3954,6 +3955,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/aio.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
   "keywords": "software, data, lesson, The Carpentries",
@@ -3962,8 +3964,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "url": "https://datacarpentry.github.io/shell-genomics/aio.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/aio.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/discuss.html b/discuss.html
index 6ca212a4..b2fccece 100644
--- a/discuss.html
+++ b/discuss.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -300,7 +298,7 @@ <h1>Discussion</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -313,6 +311,7 @@ <h1>Discussion</h1>
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/discuss.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -322,7 +321,7 @@ <h1>Discussion</h1>
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   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
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diff --git a/etherpad_template.html b/etherpad_template.html
index 893bda30..e4ec6190 100644
--- a/etherpad_template.html
+++ b/etherpad_template.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -536,7 +534,7 @@ <h4 id="please-list-another-thing-you-found-less-useful-or-that-could-be-improve
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -549,6 +547,7 @@ <h4 id="please-list-another-thing-you-found-less-useful-or-that-could-be-improve
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/etherpad_template.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
   "keywords": "software, data, lesson, The Carpentries",
@@ -558,7 +557,7 @@ <h4 id="please-list-another-thing-you-found-less-useful-or-that-could-be-improve
   "identifier": "https://datacarpentry.github.io/shell-genomics/etherpad_template.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-09-27",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index 48d98926..13cf0b03 100644
--- a/images.html
+++ b/images.html
@@ -160,14 +160,15 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
+        <a href="index.html">Summary and Setup</a>
     </div>
-    <!--/div.accordion-header-->
+<!--/div.accordion-header-->
+        
   </div>
-  <!--/div.accordion-item-->
+<!--/div.accordion-item-->
 </div>
 <!--/div.accordion-flush-->
 
@@ -338,7 +339,7 @@ <h3 id="05-writing-scripts-figure-1">Figure 1</h3>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer>
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@@ -352,6 +353,7 @@ <h3 id="05-writing-scripts-figure-1">Figure 1</h3>
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/images.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
   "keywords": "software, data, lesson, The Carpentries",
@@ -360,8 +362,8 @@ <h3 id="05-writing-scripts-figure-1">Figure 1</h3>
   "url": "https://datacarpentry.github.io/shell-genomics/images.html",
   "identifier": "https://datacarpentry.github.io/shell-genomics/images.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2023-12-19",
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diff --git a/index.html b/index.html
index 76b10df9..2b2a8a94 100644
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         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -347,6 +347,7 @@ <h3 class="callout-title">For Instructors<a class="anchor" aria-label="anchor" h
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   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/index.html",
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   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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 }
 
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diff --git a/instructor-notes.html b/instructor-notes.html
index 49e3c6a4..9069147d 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
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                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
+        <a href="index.html">Summary and Setup</a>
     </div>
-    <!--/div.accordion-header-->
+<!--/div.accordion-header-->
+        
   </div>
-  <!--/div.accordion-item-->
+<!--/div.accordion-item-->
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 <!--/div.accordion-flush-->
 
@@ -408,7 +409,7 @@ <h4 id="command-prompt-editing">Command Prompt Editing<a class="anchor" aria-lab
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -422,6 +423,7 @@ <h4 id="command-prompt-editing">Command Prompt Editing<a class="anchor" aria-lab
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/instructor-notes.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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-  "dateModified": "2023-12-19",
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 }
 
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diff --git a/instructor/01-introduction.html b/instructor/01-introduction.html
index d9bd3430..39be894b 100644
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+++ b/instructor/01-introduction.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Schedule</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlushcurrent">
   <div class="accordion-item">
@@ -579,7 +577,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
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 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb14">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -754,7 +752,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 	<div id="to-top">
@@ -767,6 +765,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/instructor/01-introduction.html",
+  "inLanguage": "en",
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   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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 }
 
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diff --git a/instructor/02-the-filesystem.html b/instructor/02-the-filesystem.html
index b87f97ee..bcbf1235 100644
--- a/instructor/02-the-filesystem.html
+++ b/instructor/02-the-filesystem.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Schedule</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -403,7 +401,7 @@ <h3 class="callout-title">Finding hidden directories<a class="anchor" aria-label
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   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>First use the <code>man</code> command to look at the options for
 <code>ls</code>.</p>
@@ -506,7 +504,7 @@ <h3 class="callout-title">Navigating practice<a class="anchor" aria-label="ancho
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 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb21">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -613,7 +611,7 @@ <h3 class="callout-title">Relative path resolution<a class="anchor" aria-label="
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 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>No: there <em>is</em> a directory <code>backup</code> in
 <code>/Users</code>.</li>
@@ -724,7 +722,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
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 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -737,6 +735,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/instructor/02-the-filesystem.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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   "dateModified": "2023-05-08",
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diff --git a/instructor/03-working-with-files.html b/instructor/03-working-with-files.html
index 2c33e1b6..a1e2c1cb 100644
--- a/instructor/03-working-with-files.html
+++ b/instructor/03-working-with-files.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
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     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Schedule</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -397,7 +395,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
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 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><code>ls /usr/bin/c*</code></li>
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@@ -447,7 +445,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
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 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb10">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
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 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <p>First type <code>history</code>. Then use <code>!</code> followed by
 the line number to rerun that command.</p>
@@ -582,7 +580,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
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 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li>The last line of the file is
 <code>C:CCC::CCCCCCCC&lt;8?6A:C28C&lt;608'&amp;&amp;&amp;,'$</code>.</li>
@@ -653,7 +651,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
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 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <p><code>CAC</code></p>
 </div>
@@ -1002,7 +1000,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
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 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
 <div class="accordion-body">
 <ol style="list-style-type: decimal"><li><code>rm -r backup</code></li>
 <li>
@@ -1084,7 +1082,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 	<div id="to-top">
@@ -1097,6 +1095,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/instructor/03-working-with-files.html",
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diff --git a/instructor/04-redirection.html b/instructor/04-redirection.html
index ce318574..a4676c94 100644
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@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
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                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
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-      <a href="index.html">Summary and Schedule</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
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@@ -1138,7 +1136,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -1151,6 +1149,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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   "@type": "TrainingMaterial",
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   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -1160,7 +1159,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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-  "datePublished": "2023-12-19"
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diff --git a/instructor/05-writing-scripts.html b/instructor/05-writing-scripts.html
index 6f0d830d..1934a0c5 100644
--- a/instructor/05-writing-scripts.html
+++ b/instructor/05-writing-scripts.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Schedule</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -436,7 +434,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
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 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Use <code>nano README.txt</code> to open the file.<br>
 Add today’s date and then use <kbd>Ctrl</kbd>-<kbd>X</kbd> followed by
@@ -526,7 +524,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
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 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <pre><code>$ bash bad-reads-script.sh
 Script finished!</code></pre>
@@ -697,7 +695,7 @@ <h3 id="moving-files-between-your-laptop-and-your-instance">Moving files between
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 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
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 <div class="accordion-body">
 <p><code>scp</code> stands for ‘secure copy protocol’, and is a widely
 used UNIX tool for moving files between computers. The simplest way to
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 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <p>If you’re using a Windows PC without Git Bash, we recommend you use
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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   "@type": "TrainingMaterial",
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diff --git a/instructor/06-organization.html b/instructor/06-organization.html
index 20a5f7c4..423eb329 100644
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                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
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-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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   "@type": "TrainingMaterial",
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diff --git a/instructor/404.html b/instructor/404.html
index 6cb4ecc6..7859a7a0 100644
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+++ b/instructor/404.html
@@ -131,12 +131,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
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-      <a href="https://datacarpentry.github.io/shell-genomics/index.html" class="external-link">Summary and Setup</a>
+        <a href="https://datacarpentry.github.io/shell-genomics/index.html" class="external-link">Summary and Setup</a>
     </div>
-    <!--/div.accordion-header-->
+<!--/div.accordion-header-->
+        
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-  <!--/div.accordion-item-->
+<!--/div.accordion-item-->
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+
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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diff --git a/instructor/CODE_OF_CONDUCT.html b/instructor/CODE_OF_CONDUCT.html
index 1778a2fb..18a00f7b 100644
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+++ b/instructor/CODE_OF_CONDUCT.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
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                 <div class="accordion-body">
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+                  <div class="accordion accordion-flush" id="accordionFlush1">
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+        <a href="index.html">Summary and Schedule</a>
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 <div class="accordion accordion-flush" id="accordionFlush2">
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@@ -309,7 +307,7 @@ <h1>Contributor Code of Conduct</h1>
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@@ -322,6 +320,7 @@ <h1>Contributor Code of Conduct</h1>
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diff --git a/instructor/Extra_lesson.html b/instructor/Extra_lesson.html
index e88d3b89..ef136732 100644
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/instructor/Extra_lesson.html",
+  "inLanguage": "en",
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   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -712,7 +711,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/Extra_lesson.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
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diff --git a/instructor/LICENSE.html b/instructor/LICENSE.html
index adfe17b9..d7852767 100644
--- a/instructor/LICENSE.html
+++ b/instructor/LICENSE.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
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     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Schedule</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -360,7 +358,7 @@ <h1>Licenses</h1>
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         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 	<div id="to-top">
@@ -373,6 +371,7 @@ <h1>Licenses</h1>
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/instructor/LICENSE.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/LICENSE.html",
   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
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diff --git a/instructor/aio.html b/instructor/aio.html
index 01a3961a..6121aa29 100644
--- a/instructor/aio.html
+++ b/instructor/aio.html
@@ -163,14 +163,15 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Schedule</a>
+        <a href="index.html">Summary and Schedule</a>
     </div>
-    <!--/div.accordion-header-->
+<!--/div.accordion-header-->
+        
   </div>
-  <!--/div.accordion-item-->
+<!--/div.accordion-item-->
 </div>
 <!--/div.accordion-flush-->
 
@@ -623,7 +624,7 @@ <h3 class="callout-title">Challenge<a class="anchor" aria-label="anchor" href="#
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb14">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -906,7 +907,7 @@ <h3 class="callout-title">Finding hidden directories<a class="anchor" aria-label
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>First use the <code>man</code> command to look at the options for
 <code>ls</code>.</p>
@@ -1010,7 +1011,7 @@ <h3 class="callout-title">Navigating practice<a class="anchor" aria-label="ancho
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb21">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1121,7 +1122,7 @@ <h3 class="callout-title">Relative path resolution<a class="anchor" aria-label="
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   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>No: there <em>is</em> a directory <code>backup</code> in
@@ -1337,7 +1338,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li><code>ls /usr/bin/c*</code></li>
@@ -1389,7 +1390,7 @@ <h3 class="code-label">OUTPUT<i aria-hidden="true" data-feather="chevron-left"><
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb10">
 <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1481,7 +1482,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3">Show me the solution</h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <p>First type <code>history</code>. Then use <code>!</code> followed by
 the line number to rerun that command.</p>
@@ -1530,7 +1531,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4">Show me the solution</h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li>The last line of the file is
@@ -1623,7 +1624,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5">Show me the solution</h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <p><code>CAC</code></p>
 </div>
@@ -1999,7 +2000,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution6" aria-expanded="false" aria-controls="collapseSolution6">
   <h4 class="accordion-header" id="headingSolution6">Show me the solution</h4>
 </button>
-<div id="collapseSolution6" class="accordion-collapse collapse" aria-labelledby="headingSolution6" data-bs-parent="#accordionSolution6">
+<div id="collapseSolution6" class="accordion-collapse collapse" data-bs-parent="#accordionSolution6" aria-labelledby="headingSolution6">
 <div class="accordion-body">
 <ol style="list-style-type: decimal">
 <li><code>rm -r backup</code></li>
@@ -3073,7 +3074,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1">Show me the solution</h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <p>Use <code>nano README.txt</code> to open the file.<br>
 Add today’s date and then use <kbd>Ctrl</kbd>-<kbd>X</kbd> followed by
@@ -3166,7 +3167,7 @@ <h3 class="callout-title">Exercise<a class="anchor" aria-label="anchor" href="#e
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2">Show me the solution</h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
 <div class="accordion-body">
 <pre><code>$ bash bad-reads-script.sh
 Script finished!</code></pre>
@@ -3344,7 +3345,7 @@ <h3 id="moving-files-between-your-laptop-and-your-instance">Moving files between
   <h3 class="accordion-header" id="headingSpoiler1">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>SCP</h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <p><code>scp</code> stands for ‘secure copy protocol’, and is a widely
 used UNIX tool for moving files between computers. The simplest way to
@@ -3421,7 +3422,7 @@ <h3 class="code-label">BASH<i aria-hidden="true" data-feather="chevron-left"></i
   <h3 class="accordion-header" id="headingSpoiler2">
 <div class="note-square"><i aria-hidden="true" class="callout-icon" data-feather="eye"></i></div>PCSP</h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <p>If you’re using a Windows PC without Git Bash, we recommend you use
 the <em>PSCP</em> program. This program is from the same suite of tools
@@ -3952,7 +3953,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -3966,6 +3967,7 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/instructor/aio.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -3974,8 +3976,8 @@ <h3 class="callout-title">Key Points<a class="anchor" aria-label="anchor" href="
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   "identifier": "https://datacarpentry.github.io/shell-genomics/instructor/aio.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
+  "dateModified": "2023-12-26",
+  "datePublished": "2023-12-26"
 }
 
   </script><script>
diff --git a/instructor/discuss.html b/instructor/discuss.html
index 018afbef..245df611 100644
--- a/instructor/discuss.html
+++ b/instructor/discuss.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Schedule</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -302,7 +300,7 @@ <h1>Discussion</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
 			</div>
 		</footer></div> <!-- / div.container -->
 	<div id="to-top">
@@ -315,6 +313,7 @@ <h1>Discussion</h1>
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/instructor/discuss.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -324,7 +323,7 @@ <h1>Discussion</h1>
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   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
-  "datePublished": "2023-12-19"
+  "datePublished": "2023-12-26"
 }
 
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diff --git a/instructor/etherpad_template.html b/instructor/etherpad_template.html
index 7989c55a..1b2f5664 100644
--- a/instructor/etherpad_template.html
+++ b/instructor/etherpad_template.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Schedule</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Schedule</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -538,7 +536,7 @@ <h4 id="please-list-another-thing-you-found-less-useful-or-that-could-be-improve
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
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+                  <div class="accordion accordion-flush" id="accordionFlush1">
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-      <a href="index.html">Summary and Schedule</a>
+        <a href="index.html">Summary and Schedule</a>
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+<!--/div.accordion-header-->
+        
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-      <a href="index.html">Summary and Schedule</a>
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diff --git a/instructor/profiles.html b/instructor/profiles.html
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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@@ -404,6 +405,7 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/key-points.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
   "keywords": "software, data, lesson, The Carpentries",
@@ -412,8 +414,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
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   "identifier": "https://datacarpentry.github.io/shell-genomics/key-points.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
+  "dateModified": "2023-12-26",
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 }
 
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diff --git a/pkgdown.yml b/pkgdown.yml
index f50ec4f0..f2eaf122 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,5 +2,5 @@ pandoc: 2.19.2
 pkgdown: 2.0.7
 pkgdown_sha: ~
 articles: {}
-last_built: 2023-12-19T00:11Z
+last_built: 2023-12-26T00:11Z
 
diff --git a/profiles.html b/profiles.html
index aec96ee4..069873cb 100644
--- a/profiles.html
+++ b/profiles.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -259,7 +257,7 @@ <h1>Learner Profiles</h1>
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
-        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.1" class="external-link">sandpaper (0.16.1)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 	<div id="to-top">
@@ -272,6 +270,7 @@ <h1>Learner Profiles</h1>
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/profiles.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -280,8 +279,8 @@ <h1>Learner Profiles</h1>
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   "identifier": "https://datacarpentry.github.io/shell-genomics/profiles.html",
   "dateCreated": "2015-03-24",
-  "dateModified": "2023-12-19",
-  "datePublished": "2023-12-19"
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 }
 
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diff --git a/reference.html b/reference.html
index ec1866b0..c0bf1d91 100644
--- a/reference.html
+++ b/reference.html
@@ -127,16 +127,14 @@ <h2 class="accordion-header chapters" id="flush-headingEleven">
               <div id="flush-collapseEleven" class="accordion-collapse show collapse" aria-labelledby="flush-headingEleven" data-bs-parent="#accordionFlush11">
 
                 <div class="accordion-body">
-                  <?xml version="1.0" encoding="UTF-8"?><div class="accordion accordion-flush" id="accordionFlush1">
+                  <div class="accordion accordion-flush" id="accordionFlush1">
   <div class="accordion-item">
     <div class="accordion-header" id="flush-heading1">
-      <a href="index.html">Summary and Setup</a>
-    </div>
-    <!--/div.accordion-header-->
-  </div>
-  <!--/div.accordion-item-->
-</div>
-<!--/div.accordion-flush-->
+        <a href="index.html">Summary and Setup</a>
+    </div><!--/div.accordion-header-->
+        
+  </div><!--/div.accordion-item-->
+</div><!--/div.accordion-flush-->
 
 <div class="accordion accordion-flush" id="accordionFlush2">
   <div class="accordion-item">
@@ -577,7 +575,7 @@ <h3 id="high-throughput-sequencing">High-throughput sequencing<a class="anchor"
         <p>Materials licensed under <a href="LICENSE.html">CC-BY 4.0</a> by the authors</p>
         
         <p>Template licensed under <a href="https://creativecommons.org/licenses/by-sa/4.0/" class="external-link">CC-BY 4.0</a> by <a href="https://carpentries.org/" class="external-link">The Carpentries</a></p>
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+        <p>Built with <a href="https://github.com/carpentries/sandpaper/tree/0.16.2" class="external-link">sandpaper (0.16.2)</a>, <a href="https://github.com/carpentries/pegboard/tree/0.7.3" class="external-link">pegboard (0.7.3)</a>, and <a href="https://github.com/carpentries/varnish/tree/1.0.1" class="external-link">varnish (1.0.1)</a></p>
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 	<div id="to-top">
@@ -590,6 +588,7 @@ <h3 id="high-throughput-sequencing">High-throughput sequencing<a class="anchor"
   "@context": "https://schema.org",
   "@type": "TrainingMaterial",
   "@id": "https://datacarpentry.github.io/shell-genomics/reference.html",
+  "inLanguage": "en",
   "dct:conformsTo": "https://bioschemas.org/profiles/TrainingMaterial/1.0-RELEASE",
   "description": "A Carpentries Lesson teaching foundational data and coding skills to researchers worldwide",
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@@ -599,7 +598,7 @@ <h3 id="high-throughput-sequencing">High-throughput sequencing<a class="anchor"
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   "dateCreated": "2015-03-24",
   "dateModified": "2023-05-08",
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