update on the 2020 PNAS CWR of the USA workflow for new species
This is the base R workflow. See branch 'targets' for the targets based implementation of this modelling effort.
As of 2023-08-16 the primary modeling methodology has been implemented and testing is occuring.
- revamp the existing CWR modeling methodology update libraries
- replace absolute paths with a rproj file structure
- provide more separation of the data cleaning, modeling, and gap analysis processes.
- develop a more adaptive and flexible workflow that can be applied to additional species in the future
Data: holds inputs and outputs for the modeling effort and county level map developed. Individual species data for model runs will be store in here as well.
preprocessing : code base and some content specific input datasets for prepping species observational data from multiple primary data sources
R2 : functions and scripts to exicute the modeling process and generate the species level summary documents.