Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Develop - 3.5.6 #1356

Merged
merged 27 commits into from
Jan 20, 2025
Merged

Develop - 3.5.6 #1356

merged 27 commits into from
Jan 20, 2025

Conversation

WardDeb
Copy link
Member

@WardDeb WardDeb commented Jan 20, 2025

Welcome to deepTools GitHub repository! Please check the following regarding
your pull request :

  • Does the PR contain new feature?
  • Does the PR contain bugfix?
  • Does the PR contain documentation changes?
  • Does the PR contain changes to the galaxy wrapper?

WardDeb and others added 27 commits March 11, 2024 12:16
@WardDeb
version boost, and include GRCm39 in ESS docs
36923f8
@WardDeb
Merge pull request #1297 from deeptools/ESS_docs
5a04290 
version boost, and include GRCm39 in ESS docs
@WardDeb
ensure -a/-b are positive
5a58993
@WardDeb
flake fix computeMatrix
9e1a559
@WardDeb
Merge pull request #1301 from deeptools/computematrix_args
ae04dad 
ensure -a/-b are positive
@WardDeb
drop bws from plotFingerPrint doc
0154ed2
@WardDeb
Merge pull request #1302 from deeptools/plotfingerprint_bws
bf29fae 
drop bws from plotFingerPrint doc
@zimoun
Update multiBigwigSummary.py
e9b2baa
@zimoun
Update plotCoverage.py
b86d3f2
@WardDeb
np NANs -> np.nan, np minimal version 2.0
b8a4e4a
@WardDeb
bump version deeptools
154ec52
@WardDeb
bump galaxy version in planemo tests
61fa749
@WardDeb
try pure python solution in planemo test
6f3c7f5
@WardDeb
include actions requirements in toml
28dae77
@WardDeb
planemo action reqs
28b8657
@WardDeb
malformatted action deps
5afe3bf
@WardDeb
planemo still requires samtools
cf8daaa
@WardDeb
samtools via conda-forge, bioconda
ee2f908
@WardDeb
tests via pip, drop conda
3cb08d7
@WardDeb
minimal supported python version 3.9 (numpy 2)
ee5eb0d
@WardDeb
v3.5.6 suffices for now
fd8f721
@WardDeb
drop conda usage from pypi action
60bec9a
@WardDeb
Merge pull request #1325 from deeptools/np2
df7573b 
Np2
@WardDeb
Merge pull request #1304 from zimoun/patch-1
7944dec 
Version print multibigwigsummary / plotcoverage
@WardDeb
ARM osx installation instructions
15a982d
@WardDeb
Merge pull request #1328 from deeptools/osxdocs
3936698 
ARM osx installation instructions
@adRn-s
typo
a29bd29
@WardDeb WardDeb changed the title Develop Develop - 3.5.6 Jan 20, 2025
@WardDeb WardDeb merged commit ea0f68b into master Jan 20, 2025
34 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
3 participants
@WardDeb @zimoun @adRn-s