minor

setup.py

@@ -16,8 +16,8 @@
 
 setup(
     name = 'smallrnaseq',
-    version = '0.2.2',
-    description = 'Python package for micro rna-seq routines ',
+    version = '0.3.0',
+    description = 'Package for short RNA-seq analysis',
     url='https://github.com/dmnfarrell/smallrnaseq',
     license='GPL v3',
     author = 'Damien Farrell',

smallrnaseq/__init__.py

@@ -1,4 +1,4 @@
 from .base import *
 from .utils import *
 #from analysis import *
-__version__ = '0.2.2'
+__version__ = '0.3.0'

smallrnaseq/app.py

@@ -78,6 +78,7 @@ def setup(self):
         return True
 
     def check_index(self, name):
+        """check if an index present"""
 
         fname = os.path.join(self.index_path, name+'*.ebwt')
         print (fname)
@@ -111,6 +112,7 @@ def remove_output(self):
         return
 
     def get_aligner_params(self):
+        """Get aligner parameters from current options"""
 
         ap = self.aligner_params = {}
         for i in self.libraries:
@@ -358,7 +360,7 @@ def print_help():
 def run_test():
     """Run mirna test with test files"""
 
-    print ('running mirna counting test')
+    print ('running miRNA counting test')
     indpath = 'testing/indexes'
     aligners.BOWTIE_INDEXES = indpath
     if not os.path.exists(indpath):