Updating scripts to download data from AllianceMine and new schemas #1176
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ntran18
commented
Feb 19, 2025
•
ntran18
commented
- Rewrite the script to load data from AllianceMine, also make the code to follow OOP.
- Change the schemas of the GRN and PPI to include timestamp for gene and protein table, and annotation type for network (GRN) and interactions (PPI) tables.
…t == float for length, molecular wweights and pi
Add error handling when run main.py for network database
… protein interactions to have timestamp and for gene and protein tables and annotation type for physical interactions table
… protein_protein_interactions to include _new, and fixing the populate data scripts to add timestamp and source to the gene and protein tables, and adding annotation type for both GRN and PPI network and interactions table
…, and rename database2 to database
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This PR should be ready to review. I'm sorry, this PR is large :(((. I didn't mean to ..... |
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