Mouse_SNP_Analysis_HPE

Arkell Lab SNP analysis and resulting files.

Name		Name	Last commit message	Last commit date
Latest commit History 12 Commits
.gitignore		.gitignore
Combined_Ontology.csv		Combined_Ontology.csv
Example_Ensembl_VEP_call.sh		Example_Ensembl_VEP_call.sh
FGF_Signalling_GO.csv		FGF_Signalling_GO.csv
GRCm38_results.csv		GRCm38_results.csv
GRCm39_splice_variants.csv		GRCm39_splice_variants.csv
MGI_SNP_Query_20230119_071431.txt		MGI_SNP_Query_20230119_071431.txt
MGI_SNP_Query_20230119_071724.txt		MGI_SNP_Query_20230119_071724.txt
MGI_SNP_Query_20230119_071923.txt		MGI_SNP_Query_20230119_071923.txt
MGI_query_grcm39_results_sifted.csv		MGI_query_grcm39_results_sifted.csv
MGI_query_grcm39_results_with_GERP.csv		MGI_query_grcm39_results_with_GERP.csv
MGI_query_grcm39_results_with_GERP_filt.csv		MGI_query_grcm39_results_with_GERP_filt.csv
MGI_query_results_GRCm39.csv		MGI_query_results_GRCm39.csv
Modifier_Analysis.Rproj		Modifier_Analysis.Rproj
README.md		README.md
SNP_Filterer_Recovered.R		SNP_Filterer_Recovered.R
SNP_filtering_all_datasets.Rmd		SNP_filtering_all_datasets.Rmd
VEP_installation_on_NCI.sh		VEP_installation_on_NCI.sh
filter_REL2021_SNPs.sh		filter_REL2021_SNPs.sh
mm10_to_mm39_conv.sh		mm10_to_mm39_conv.sh
results.csv		results.csv
results.tsv		results.tsv
test_repo.R		test_repo.R

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