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@drneavin drneavin released this 04 Aug 18:34
· 56 commits to main since this release
v2.0.0
b694dda
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Learn about vigilant mode.

Updates:

  • Updated Combine_Results.R script to provide unassigned if multiple demultiplexing software call a singlet but do not match or return unassigned
  • Updated upset plots in Combine_Results.R script to provide more information and functionality
  • Fixed order of software in resulting upset plot for easy comparison across pools
  • Provide more messages in Combine_Results.R scripts to notify when unexpected behavior of cell assignment is observed
  • Add functionality to provide a filtered barcode list to scds, scDblFinder, DoubletDetection and Scrublet if don't want to process all the barcodes in the filtered matrix or h5 file
  • Updated issue with h5 handling in scds and scDblFinder scripts
  • Fixed missing -N $N in Vireo command when only some genotyped individuals
  • Provided filtered vcf files of common SNPs from 1000G for users
  • Provided documentation about how to integrate Demuxafy results into single cell objects in R (Seurat) and python (AnnData)
  • Add singularity binding reminders below first singularity commands on each page
Assets 2
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