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@drneavin drneavin released this 03 Nov 06:38
· 45 commits to main since this release
v2.1.0
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Learn about vigilant mode.

Major update to fully include demuxalot and dropulation and add additional functionality. Updates include:

  • A software selection tool is now included so that users can provide the dataset characteristics and it will indicate the recommended software combination and the expected number of doublets and singlets
  • Demuxalot can now be provided to the Combine_Results.R script
  • Dropulation can now be provided to the Combine_Results.R script
  • The Combine_Results.R script has been updated to now provide summaries of the number of singlets and doublets as well as the number of droplets annotated to each donor
  • Documentation now includes a Tutorial that users can follow
  • I have added a link to a location to get a fasta file for the Test dataset for running souporcell (issue #22)
  • I have added biopython to the image so that fasta files can be gzipped (issue #23)
  • The time to run each step of each software has been added to the documents
  • The Combine_Results.R script now can handle single softwares and provides the results in a consistent manner as well as bar plots of the droplet annotations.

Some other small updates to scripts and documents were included as well. Also fixed some typos in docs.

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