Merge pull request #46 from dvklopfenstein/dvk

Move script modules into new pmidcite.script

CHANGELOG.md

@@ -3,7 +3,7 @@
 ## Summary
 
 * [**Unreleased**](#unreleased)
-* [**Release 2022-11-26 v0.0.38**](#release-2022-11-28-v0039) pip3, not pip from Python2
+* [**Release 2022-11-26 v0.0.38**](#release-2022-11-28-v0040) Added pmidcite.scripts.icite; pip3, not pip from Python2
 * [**Release 2022-11-26 v0.0.38**](#release-2022-11-26-v0038) Added instructions, and console_script to run script, icite
 * [**Release 2022-09-27 v0.0.37**](#release-2022-09-27-v0037) Remove unused package in setup.py
 * [**Release 2022-07-03 v0.0.36**](#release-2022-07-03-v0036) Change citation count on GitHub repo card
@@ -41,9 +41,9 @@
 
 ### Unreleased
 
-### release 2022-11-29 v0.0.39
+### release 2022-11-29 v0.0.40
+* ADDED `icite` to new package module, pmidcite.scripts
 * CHANGED `pip install .` to `pip3 install .` in makefile and README.md
-* ADDED `src` and `src.bin` to package modules
 
 ### release 2022-11-26 v0.0.38
 * ADDED instructions for loading locally to README.md [#43](https://github.com/dvklopfenstein/pmidcite/issues/43)

setup.py

@@ -22,13 +22,13 @@
     'pmidcite.eutils.pubmed.counts',
     'pmidcite.icite',
     'pmidcite.icite.dnldr',
+    'pmidcite.scripts',
     'pmidcite.plot',
-    'src',
-    'src.bin',
 ]
 
 PACKAGE_DIRS = {p:join('src', *p.split('.')) for p in PACKAGES}
 
+
 def get_long_description():
     """Return the contents of the README.md as a string"""
     dir_cur = abspath(dirname(__file__))
@@ -42,7 +42,7 @@ def get_long_description():
 setup(
     name=NAME,
     ## version=versioneer.get_version(),
-    version='0.0.39',
+    version='0.0.40',
     author='DV Klopfenstein, PhD',
     author_email='[email protected]',
     ## cmdclass=versioneer.get_cmdclass(),
@@ -54,7 +54,7 @@ def get_long_description():
     scripts=glob('src/bin/*.py'),
     entry_points={
         'console_scripts':[
-            'icite=src.bin.icite:main',
+            'icite=pmidcite.scripts.icite:main',
         ],
     },
     # https://pypi.org/classifiers/

src/pmidcite/__version__.py

@@ -1,3 +1,3 @@
 """Version of pmidcite project"""
 
-__version__ = '0.0.39'
+__version__ = '0.0.40'

src/pmidcite/scripts/__init__.py

@@ -0,0 +1 @@
+"""Scripts"""

src/pmidcite/scripts/icite.py

@@ -0,0 +1,15 @@
+"""Given a PubMed ID (PMID), return a list of citing publications"""
+
+__copyright__ = "Copyright (C) 2019-present, DV Klopfenstein. All rights reserved."
+__author__ = "DV Klopfenstein"
+
+from pmidcite.cli.icite import NIHiCiteCli  # get_argparser
+from pmidcite.cfg import get_cfgparser
+
+
+def main():
+    """Print NIH citation data for requested papers specified with PubMedIDs (PMIDs)"""
+    NIHiCiteCli(get_cfgparser(prt=None)).cli()
+
+
+# Copyright (C) 2019-present, DV Klopfenstein. All rights reserved.