C++/Python Tests

Fix missing toposort after rateOf-substitutions in `w` #260

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Run time

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Job	Run time
Tests MacOS C++/Python	26m 56s
C++/Python tests Ubuntu (3.9)	32m 57s
Python tests Ubuntu (3.9)	31m 34s
Tests MacOS Python	32m 34s
Notebook tests Ubuntu (3.9)	16m 7s
	2h 20m 8s