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A Neural Network Tool for Multi-Omic Classification of Cell Compartments

Python 1 Updated Jan 27, 2025

library for nonlinear optimization, wrapping many algorithms for global and local, constrained or unconstrained, optimization

C 1,932 604 Updated Jan 27, 2025

JSON for Modern C++

C++ 44,231 6,844 Updated Jan 30, 2025

Isotopologue reaction networks in Python

Python 1 Updated Dec 16, 2024

Modular visual interface for GDB in Python

Python 11,395 793 Updated Aug 13, 2024

A friend to fetch your data files

Python 645 76 Updated Jan 24, 2025

Template repository for creating plugins for IntelliJ Platform

Kotlin 3,247 667 Updated Dec 15, 2024

SBML MathML <-> SymPy

Python 8 Updated Jan 13, 2025

Cython interface for the interior point optimzer IPOPT

Python 244 57 Updated Jan 27, 2025

Nix, the purely functional package manager

C++ 13,444 1,572 Updated Jan 30, 2025
JavaScript 4 Updated Mar 29, 2023

The best free and open-source automated time tracker. Cross-platform, extensible, privacy-focused.

Python 13,252 594 Updated Oct 17, 2024

The extension for Sphinx documentation projects that handles redirects for moved pages. Based on the its configuration, the extension generates HTML pages with meta refresh redirects to the new pag…

Python 11 2 Updated Jan 17, 2025

Statistical data visualization in Python

Python 12,798 1,949 Updated Jan 26, 2025

matplotlib: plotting with Python

Python 20,637 7,723 Updated Jan 30, 2025

The specification documents for SBML.

TeX 6 3 Updated Jun 14, 2024

Operate and manipulate physical quantities in Python

Python 2,470 476 Updated Jan 18, 2025

OpenConnect proxy

C 378 40 Updated Nov 5, 2021

ANTLR (ANother Tool for Language Recognition) is a powerful parser generator for reading, processing, executing, or translating structured text or binary files.

Java 17,533 3,326 Updated Nov 22, 2024

Model selection for PEtab

Python 10 1 Updated Jan 10, 2025

The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines.

Python 466 115 Updated Dec 2, 2024

A tool (and pre-commit hook) to automatically upgrade syntax for newer versions of the language.

Python 3,674 187 Updated Jan 21, 2025

An extremely fast Python linter and code formatter, written in Rust.

Rust 35,092 1,186 Updated Jan 30, 2025

A pre-commit hook for Ruff.

Python 1,100 51 Updated Jan 30, 2025

Command line program to validate and convert CITATION.cff files.

Python 116 30 Updated Jun 28, 2024

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

Python 44,432 18,169 Updated Jan 30, 2025

Python Environment for Modeling and Simulating Biological Systems

Python 110 37 Updated Nov 19, 2024
C++ 17 4 Updated Jan 3, 2025

pytest plugin for distributed testing and loop-on-failures testing modes.

Python 1,527 232 Updated Jan 27, 2025
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