class based GUI capabilities for the var RBE plans #652
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…into dev_newScriptedGUI # Conflicts: # matRadGUI_export.m # tools/matRad_fixExportedGUI.m
# Conflicts: # gui/matRad_PlanWidget.m # gui/matRad_WorkflowWidget.m
…tify and listeners concepts in octave
# Conflicts: # dicom/@matRad_importDicomWidget/createLayout.m # dicom/@matRad_importDicomWidget/matRad_importDicomWidget.m # dicom/DKFZ_Logo.png # dicom/gui/matRad_importDicomGUI_LayoutFcn.m # dicom/gui/matRad_importDicomGUI_gui_mainFcn.m # dicom/matRad_checkEnvDicomRequirements.m # dicom/matRad_createCst.m # dicom/matRad_importDicomGUI.fig.bak # dicom/matrad_logo.png # dicomImport/DKFZ_Logo.png # dicomImport/matrad_logo.png # gfx/DKFZ_Logo.png # gfx/matrad_logo.png # matRadGUI.m # matRad_fluenceOptimization.m # matRad_showQualityIndicators.m
Add exportDicom widget. +other small fixes
…into dev_classGUI # Conflicts: # gui/matRadGUI.m
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"does not include robust optimization interface" then means that it does not reproduce what we currently have in the GUI, where we can select robustness in obejctives and also set the scenario model? Then it makes no sense to merge / review, yet? |
Feature to autofill the couch angles
… missing documentation
…n or workflow options
…r/652 # Conflicts: # dicom/matRad_importDicomRTPlan.m # dicom/matRad_scanDicomImportFolder.m # gui/widgets/matRad_OptimizationWidget.m # gui/widgets/matRad_PlanWidget.m # matRad.m
wahln
approved these changes
Sep 6, 2023
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Fails only the Matlab latest check due to the problems with the parallel pool on Github, so I will merge. |
HomolkaN
pushed a commit
to HomolkaN/matRad
that referenced
this pull request
Sep 6, 2023
commit 3215c95 Merge: ccc73dc 5263869 Author: Niklas Wahl <[email protected]> Date: Wed Sep 6 11:28:32 2023 +0200 Merge branch 'dev' into dev_varRBErobOpt commit ccc73dc Merge: e915ed6 bdc7567 Author: Niklas Wahl <[email protected]> Date: Wed Sep 6 11:22:34 2023 +0200 Merge pull request e0404#652 from amitantony/dev_varRBErobOpt_GUI class based GUI capabilities for the var RBE plans commit bdc7567 Author: amitantony <[email protected]> Date: Mon Sep 4 17:02:31 2023 +0200 bugfix for mistaken function call in plotslicewrapper commit 50b0805 Author: amitantony <[email protected]> Date: Fri Sep 1 11:42:25 2023 +0200 Robustness functionality commit 5263869 Author: Niklas Wahl <[email protected]> Date: Thu Aug 31 14:36:15 2023 +0200 fix capital letter in MatRad_Config in CT dicom import commit 0e76650 Author: Niklas Wahl <[email protected]> Date: Thu Aug 31 14:35:45 2023 +0200 fix missing env switch in dicom import commit 0040374 Merge: fe7fe40 51734ac Author: Niklas Wahl <[email protected]> Date: Thu Aug 31 11:46:51 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into pr/652 # Conflicts: # dicom/matRad_importDicomRTPlan.m # dicom/matRad_scanDicomImportFolder.m # gui/widgets/matRad_OptimizationWidget.m # gui/widgets/matRad_PlanWidget.m # matRad.m commit a5a8e62 Merge: 2ff9f09 51734ac Author: Niklas Wahl <[email protected]> Date: Thu Aug 31 11:02:32 2023 +0200 Merge pull request e0404#646 from e0404/dev_classGUI class GUI for dev commit fe7fe40 Author: Amit Bennan <[email protected]> Date: Thu Aug 31 10:56:35 2023 +0200 clean up code commit 629f91d Author: amitantony <[email protected]> Date: Tue Aug 29 16:53:38 2023 +0200 Using Scenario based optimization for the gui commit 51734ac Merge: 33f3a1d 38a43ce Author: Amit Bennan <[email protected]> Date: Fri Aug 4 13:04:06 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit 33f3a1d Author: Amit Bennan <[email protected]> Date: Fri Aug 4 13:03:07 2023 +0200 Bug fix for Viewing widget and Viewer option updates on changes to pln or workflow options commit 38a43ce Author: Niklas Wahl <[email protected]> Date: Thu Aug 3 15:22:28 2023 -0700 some more cleanup and default positioning of widgets commit 27b01e8 Author: Niklas Wahl <[email protected]> Date: Thu Aug 3 14:59:34 2023 -0700 fix for obtaining environment information commit 68b8c3a Author: Niklas Wahl <[email protected]> Date: Thu Aug 3 14:37:06 2023 -0700 some cleanup commit 43e086e Author: Niklas Wahl <[email protected]> Date: Thu Aug 3 14:13:19 2023 -0700 deprecate java warning commit 37c0ff8 Author: Amit Bennan <[email protected]> Date: Thu Aug 3 18:57:09 2023 +0200 1. matRad.m to original example setting, 2. MainGUI Documentation, 3. missing documentation commit 6e03ecf Merge: 0991137 92bc88d Author: Amit Bennan <[email protected]> Date: Wed Aug 2 22:41:37 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit 0991137 Author: Amit Bennan <[email protected]> Date: Wed Aug 2 22:41:03 2023 +0200 'isOctave' checks replaced with 'matRad_Config object.isOctave' commit 92bc88d Author: amitantony <[email protected]> Date: Tue Aug 1 15:20:45 2023 +0200 Documentation and TODO update commit bfaf5f1 Author: amitantony <[email protected]> Date: Fri Jul 28 17:11:48 2023 +0200 Comments and documentation corrections commit aaec9ba Merge: 41e2a65 5385ba4 Author: Niklas Wahl <[email protected]> Date: Tue Jul 25 16:10:29 2023 +0200 Merge pull request e0404#653 from amitantony/dev_classGUI_feature Feature to autofill the couch angles commit cf4fe0b Author: amitantony <[email protected]> Date: Tue Jul 25 09:01:03 2023 +0200 Default Values for BioParam commit 5385ba4 Author: amitantony <[email protected]> Date: Tue Jul 25 08:44:39 2023 +0200 Feature to autofill the couch angles to gantry angle size if single value of couch angle is entered commit 78cd622 Author: amitantony <[email protected]> Date: Mon Jul 24 18:29:50 2023 +0200 carbon pop up bug commit 9c7a91d Author: amitantony <[email protected]> Date: Mon Jul 24 18:26:51 2023 +0200 pop up bug for bio model commit 5b35787 Author: amitantony <[email protected]> Date: Mon Jul 24 17:53:51 2023 +0200 Merge mistake Rectified commit 322ca69 Merge: 522569c 41e2a65 Author: amitantony <[email protected]> Date: Mon Jul 24 17:37:43 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_varRBErobOpt_GUI commit 522569c Merge: f3ea5c8 e915ed6 Author: amitantony <[email protected]> Date: Mon Jul 24 13:19:42 2023 +0200 Merge branch 'dev_varRBErobOpt' of https://github.com/e0404/matRad into dev_varRBErobOpt_GUI commit f3ea5c8 Merge: 87832ed ca479fe Author: amitantony <[email protected]> Date: Mon Jul 24 13:18:41 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_varRBErobOpt_GUI Runs Basic Var RBE plans in GUI commit e915ed6 Merge: ce9179d 9cc05a8 Author: Niklas Wahl <[email protected]> Date: Fri Jul 21 16:59:52 2023 +0200 Merge pull request e0404#650 from piastammer/dev_varRBErobOpt minor bug fix and small documentation changes commit ce9179d Merge: 32bff43 6ef2c24 Author: Niklas Wahl <[email protected]> Date: Fri Jul 21 16:57:40 2023 +0200 Merge pull request e0404#649 from remocristoforetti/dev_varRBErobOpt_bugFix minor bug fix commit 9cc05a8 Author: Pia Stammer <[email protected]> Date: Fri Jul 21 16:53:47 2023 +0200 added warning and TODO for single bixel example commit 6ef2c24 Author: remocristoforetti <[email protected]> Date: Fri Jul 21 16:44:19 2023 +0200 minor change in generic photon machine machine.meta.name turned into machine.meta.machine commit 41e2a65 Author: Amit Bennan <[email protected]> Date: Fri Jul 21 16:42:27 2023 +0200 bugfix for error on loading first case commit ad9f5f9 Author: remocristoforetti <[email protected]> Date: Fri Jul 21 16:34:06 2023 +0200 error printout message fix in matRad_multScen commit 32bff43 Merge: 87832ed a6f7004 Author: Niklas Wahl <[email protected]> Date: Fri Jul 21 15:09:43 2023 +0200 Merge pull request e0404#624 from tobiasbecher/dev_Pareto Small changes to where penalties are applied commit ca479fe Author: Amit Bennan <[email protected]> Date: Fri Jul 21 14:45:33 2023 +0200 set tissue warning commit 42a4edc Author: Pia Stammer <[email protected]> Date: Fri Jul 21 14:44:01 2023 +0200 added TODOs to check commented lines commit da50e91 Author: Amit Bennan <[email protected]> Date: Fri Jul 21 14:30:33 2023 +0200 test if pln.propSeq exists ( bug from example 1 with GUI) commit 59e3e43 Author: Pia Stammer <[email protected]> Date: Fri Jul 21 14:22:15 2023 +0200 removed redundant copyright statements & added Todos for documenation commit e400ee9 Author: Pia Stammer <[email protected]> Date: Fri Jul 21 13:56:22 2023 +0200 Set default BAMStoIsoDist for topas machine file commit f497b16 Author: Amit Bennan <[email protected]> Date: Fri Jul 21 11:56:40 2023 +0200 bugfix: 1. fixed reinitialization parameter changes, 2. fixed faulty overwrite of VOIPlotFlag that caused skipping contours commit 87832ed Merge: acd73e7 2958dc4 Author: Niklas Wahl <[email protected]> Date: Thu Jul 20 11:07:55 2023 +0200 Merge pull request e0404#610 from tobiasbecher/dev_varRBErobOptPhantomBuilder Phantom builder added commit 2958dc4 Merge: 03ec1a0 acd73e7 Author: Niklas Wahl <[email protected]> Date: Thu Jul 20 10:01:53 2023 +0200 Merge branch 'dev_varRBErobOpt' into pr/610 # Conflicts: # .gitignore commit 03ec1a0 Author: Niklas Wahl <[email protected]> Date: Thu Jul 20 10:00:26 2023 +0200 reorganization of builder files commit acd73e7 Merge: c9acdc5 a83b691 Author: Niklas Wahl <[email protected]> Date: Wed Jul 19 17:15:39 2023 +0200 Merge branch 'dev_varRBErobOpt' of https://github.com/e0404/matRad into dev_varRBErobOpt commit c9acdc5 Author: Niklas Wahl <[email protected]> Date: Wed Jul 19 17:15:33 2023 +0200 Update of base data file for estimate of energy spectrum commit 2f00898 Author: Tobias Becher <[email protected]> Date: Mon Jul 10 12:47:38 2023 +0200 Final updates Final changes to the phantom builder commit a83b691 Merge: d5bf94a f2e62b6 Author: Niklas Wahl <[email protected]> Date: Mon Jul 10 10:13:15 2023 +0200 Merge pull request e0404#642 from JenHardt/dev_varRBErobOpt IsoCenterShift BugFix commit f2e62b6 Author: JenHardt <[email protected]> Date: Fri Jul 7 13:56:16 2023 +0200 IsoCenterShift BugFix commit bca2260 Author: Tobias Becher <[email protected]> Date: Fri Jun 30 14:41:50 2023 +0200 Update matRad_runTests.m commit d474f09 Author: Tobias Becher <[email protected]> Date: Fri Jun 30 14:33:25 2023 +0200 Removed indexing of VOI VOI are no longer assigned an index on initialization. -> No need to clear all at the start of a script if rerunning commit c12f5e8 Author: Tobias Becher <[email protected]> Date: Fri Jun 30 14:10:55 2023 +0200 Fixed geometry issues Fixed issues with the coordinate system commit a6f7004 Author: Tobias Becher <[email protected]> Date: Fri Jun 30 10:24:52 2023 +0200 Slack parameter changes - Changed epsilon variable name to slackParameter - Now parameter of constraint - Removed objective funtion to turn into constraint commit c91799c Merge: 94e701c 4177468 Author: amitantony <[email protected]> Date: Fri Jun 30 10:03:04 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit dedf147 Author: Tobias Becher <[email protected]> Date: Wed Jun 28 13:37:18 2023 +0200 Some changes Some changes made for pull request. Commit also tests if server tests now run through. commit d5bf94a Author: Niklas Wahl <[email protected]> Date: Wed Jun 28 10:18:28 2023 +0200 allows to compute the bixel dose when cutoff was not precomputed by setting the compensation factor to 1 commit 83fc8a6 Author: Niklas Wahl <[email protected]> Date: Wed Jun 28 10:17:45 2023 +0200 emittance base data format now allows one emittance per focus commit 5fda67e Merge: 99eaa34 bffb834 Author: Niklas Wahl <[email protected]> Date: Wed Jun 21 10:56:08 2023 +0200 Merge pull request e0404#637 from remocristoforetti/dev_varRBErobOpt_bugFix_MCemittanceBaseData bugFix in MCemittanceBaseData for negative distances commit bffb834 Author: RemoCristoforetti <[email protected]> Date: Wed Jun 21 10:49:28 2023 +0200 bugFix negative distance for spot size correction in air. commit 99eaa34 Author: Niklas Wahl <[email protected]> Date: Wed Jun 21 10:10:19 2023 +0200 Fix matRad_MCemittanceBaseData.m Replaced Inf with realmax so interpolation does not error commit 3e7952a Author: Niklas Wahl <[email protected]> Date: Wed Jun 7 13:19:31 2023 +0200 AppendResultGUI now creates consistent fieldnames commit c5dd9eb Author: Niklas Wahl <[email protected]> Date: Tue Jun 6 18:32:40 2023 +0200 appendresultgui now either overwrites or always appends the identifier commit 1bab14d Author: Niklas Wahl <[email protected]> Date: Tue Jun 6 18:32:21 2023 +0200 fix for the spot size air MCS correction commit 6a746ee Author: Niklas Wahl <[email protected]> Date: Tue Jun 6 14:13:20 2023 +0200 fix variable names in example 12 commit a7e72fa Author: Niklas Wahl <[email protected]> Date: Tue Jun 6 14:13:01 2023 +0200 add empirical correction for MCS in air when approximating beam model commit 1a80ea9 Author: Tobias Becher <[email protected]> Date: Mon Jun 5 11:01:52 2023 +0200 Name change for constraints Changed the name for created constraints in the optimization commit 94e701c Author: amitantony <[email protected]> Date: Fri Jun 2 15:25:13 2023 +0200 1. avoid sequencing warning everytime we optimize particles, 2. IGNORED as a tissue type, 3. fix for "ignoring legend entries" warning , 4. DVHStat naming bugfix commit 4177468 Merge: 2273867 893f9b3 Author: Niklas Wahl <[email protected]> Date: Thu Jun 1 14:02:31 2023 +0200 Merge pull request e0404#631 from amitantony/bug/DVHWidgetFix Bug/dvh widget fix commit f59722c Merge: 893f9b3 2273867 Author: amitantony <[email protected]> Date: Thu Jun 1 12:38:18 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit 893f9b3 Author: amitantony <[email protected]> Date: Wed May 31 15:58:13 2023 +0200 Consistant naming fix commit ae58086 Author: amitantony <[email protected]> Date: Wed May 31 15:45:17 2023 +0200 more compact application of recenter commit 2273867 Merge: 37c2f02 602bae6 Author: Amit Bennan <[email protected]> Date: Wed May 31 15:36:47 2023 +0200 Merge pull request e0404#626 from amitantony/dev_classGUI_matPatientLoadBug Dev class GUI .mat patient load bug commit 8c2d20e Author: amitantony <[email protected]> Date: Wed May 31 15:34:18 2023 +0200 feature: Recentering to iso center button commit 602bae6 Author: amitantony <[email protected]> Date: Tue May 30 18:01:48 2023 +0200 fix for test failing in matRad.m commit 48ca910 Author: Niklas Wahl <[email protected]> Date: Tue May 30 16:35:22 2023 +0200 revert explicit start of parpool in testing pipeline commit 871e0b6 Merge: 153ba54 a531a2d Author: Niklas Wahl <[email protected]> Date: Tue May 30 16:27:48 2023 +0200 Merge branch 'dev_varRBErobOpt' of https://github.com/e0404/matRad into dev_varRBErobOpt commit 153ba54 Author: Niklas Wahl <[email protected]> Date: Tue May 30 16:25:33 2023 +0200 explicit start of parallel pool in testing workflow commit 7561424 Merge: ec8fd78 37c2f02 Author: amitantony <[email protected]> Date: Tue May 30 15:07:11 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI_matPatientLoadBug commit a531a2d Author: Niklas Wahl <[email protected]> Date: Tue May 30 13:51:31 2023 +0200 Fix wrong test folder in tests.yml commit d2da6e4 Merge: 8f03510 d6ea09a Author: Niklas Wahl <[email protected]> Date: Tue May 30 13:42:19 2023 +0200 Merge branch 'master' of https://github.com/e0404/matRad into dev_varRBErobOpt # Conflicts: # .github/workflows/tests.yml # MatRad_Config.m # matRad_fluenceOptimization.m # matRad_rc.m # ompMC/matRad_compileOmpMCInterface.m # optimization/optimizer/compile_ipopt_minGW_octave640.sh commit d6ea09a Merge: 689eabe beaee4e Author: Niklas Wahl <[email protected]> Date: Tue May 30 13:27:32 2023 +0200 Merge pull request e0404#628 from e0404/hotfix/fixTestEnvironment Hotfix to the test pipeline on the master branch commit beaee4e Merge: 2f42625 689eabe Author: Niklas Wahl <[email protected]> Date: Fri May 26 19:14:53 2023 +0200 Merge branch 'master' into hotfix/fixTestEnvironment commit 37c2f02 Merge: 5984075 72d5d3c Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:58:18 2023 +0200 Merge pull request e0404#625 from amitantony/dev_classGUI_a_DicomImportBug Dev class GUI a dicom import bug commit 72d5d3c Merge: ef55778 5984075 Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:57:28 2023 +0200 Merge branch 'dev_classGUI' into dev_classGUI_a_DicomImportBug commit 5984075 Merge: 671baea 1f7bc74 Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:55:48 2023 +0200 Merge pull request e0404#627 from amitantony/dev_classGUI_IsoDoseBugFix BUGFIX: Iso dose contour not updated with changing selectedDisplayOption commit 2f42625 Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:44:48 2023 +0200 Update job name for octave commit 0fe09aa Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:35:04 2023 +0200 Update job name commit 2397e3f Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:23:04 2023 +0200 Add latest supported release options for tests to cover for release changes commit ef55778 Author: amitantony <[email protected]> Date: Fri May 26 16:15:48 2023 +0200 Class GUI dicom import bugs resolve to return atleast 1 DICOM patient case commit fa26d01 Author: Tobias Becher <[email protected]> Date: Fri May 26 16:15:06 2023 +0200 Small changes to where penalties are applied Moved the penalties from the objectives to the objective function. Also added an option for objective constraint. commit ec8fd78 Author: Amit Bennan <[email protected]> Date: Fri May 26 14:30:12 2023 +0200 bug fix on first load of patient case commit 689eabe Merge: f7bded9 46d5f2c Author: Amit Bennan <[email protected]> Date: Fri May 26 11:35:38 2023 +0200 Merge pull request e0404#608 from e0404/bug/606-matrad_plotvoicontourslice-tries-to-access-ct-as-cell-bug fix passes ct struct instead of ct.cubeHU to matRad_plotVoiContourSlice commit 2bca404 Author: Tobias Becher <[email protected]> Date: Fri May 26 11:27:42 2023 +0200 Compatibility with test script Added phantomBuilder example to test script and rounding added in BOX phantom assignment commit 1f7bc74 Author: amitantony <[email protected]> Date: Fri May 26 11:09:50 2023 +0200 Bugfix for : Iso dose contour not updated with changing selectedDisplayOption commit 8f03510 Merge: 58362ac 82742b0 Author: Niklas Wahl <[email protected]> Date: Tue May 23 18:25:09 2023 +0200 Merge pull request e0404#621 from tobiasbecher/dev_varRBErobOptGradient Bugfix for RBExD gradient calculation. commit 82742b0 Author: Tobias Becher <[email protected]> Date: Tue May 16 10:27:55 2023 +0200 Update .gitignore commit 19799c8 Author: Tobias Becher <[email protected]> Date: Tue May 16 10:24:27 2023 +0200 Fixed gradient Bug commit 58362ac Author: Niklas Wahl <[email protected]> Date: Wed May 10 12:08:26 2023 +0200 correct for reading x and y spot sizes from emittance data in topas interface commit 380b740 Author: Tobias Becher <[email protected]> Date: Fri Apr 28 16:19:12 2023 +0200 Update matRad_runTests.m Removing new example1 for now from unit tests commit 497e036 Author: Tobias Becher <[email protected]> Date: Fri Apr 28 15:56:33 2023 +0200 Final changes Renamed matRad_VOIVolume to matRad_PhantomVOIVolume and changed example files. commit 46d5f2c Merge: 539dc94 f7bded9 Author: Niklas Wahl <[email protected]> Date: Fri Apr 28 15:35:17 2023 +0200 Merge branch 'master' into bug/606-matrad_plotvoicontourslice-tries-to-access-ct-as-cell-bug commit f7bded9 Merge: 03cc52f 7456efc Author: Niklas Wahl <[email protected]> Date: Fri Apr 28 15:34:40 2023 +0200 Merge pull request e0404#607 from e0404/bug/605-bug-warning-and-error-messages-in-matrad_readnrrd-fail-string-concatenation-is-wrong-when-linecontent-is-an-empty-cell Error message rectified commit 539dc94 Merge: 711dc58 03cc52f Author: Amit Bennan <[email protected]> Date: Fri Apr 28 15:23:39 2023 +0200 Merge branch 'master' into bug/606-matrad_plotvoicontourslice-tries-to-access-ct-as-cell-bug commit 7456efc Merge: 8fb0fb8 03cc52f Author: Niklas Wahl <[email protected]> Date: Fri Apr 28 15:01:26 2023 +0200 Merge branch 'master' into bug/605-bug-warning-and-error-messages-in-matrad_readnrrd-fail-string-concatenation-is-wrong-when-linecontent-is-an-empty-cell commit 03cc52f Merge: b2ce690 bb41c69 Author: Niklas Wahl <[email protected]> Date: Fri Apr 28 14:59:51 2023 +0200 Merge pull request e0404#617 from SakuMyl/master Check installation of image processing toolbox in DICOM import commit bb41c69 Author: Saku Myllymäki <[email protected]> Date: Fri Apr 28 14:23:24 2023 +0300 check installation of image processing toolbox commit 8fb0fb8 Author: Amit Bennan <[email protected]> Date: Thu Apr 20 15:21:47 2023 +0200 displays parsed line in warning message commit 711dc58 Merge: bcbc8b7 b2ce690 Author: Amit Bennan <[email protected]> Date: Tue Apr 11 11:41:53 2023 +0200 Merge branch 'master' into bug/606-matrad_plotvoicontourslice-tries-to-access-ct-as-cell-bug commit 85f7cda Author: Niklas Wahl <[email protected]> Date: Thu Apr 6 17:06:51 2023 +0200 fix problem with constant property containing filepath commit d6238cd Author: Niklas Wahl <[email protected]> Date: Wed Apr 5 14:59:25 2023 +0200 Update tests.yml Update apt before octave install commit eab8fc2 Merge: 375987a b2ce690 Author: Niklas Wahl <[email protected]> Date: Wed Apr 5 14:46:18 2023 +0200 Merge branch 'master' into bug/605-bug-warning-and-error-messages-in-matrad_readnrrd-fail-string-concatenation-is-wrong-when-linecontent-is-an-empty-cell commit b10d896 Author: Tobias Becher <[email protected]> Date: Tue Apr 4 11:46:17 2023 +0200 Changed number of example file commit 48786f3 Author: Tobias Becher <[email protected]> Date: Tue Apr 4 11:35:05 2023 +0200 Updates to the phantom - Moved ct creation to phantom builder - ct and cst are now private and can be received by calling getctst - Added documentaion to phantom builder functions - Modified example file to incorporate changes commit cf1e27b Author: Tobias Becher <[email protected]> Date: Tue Apr 4 11:32:06 2023 +0200 Updates to VOI related classes Renamed Cubic and Spherical VOI classes Added option to set HU for VOI commit ba69a3b Merge: 4d394f6 b85ec2c Author: Niklas Wahl <[email protected]> Date: Mon Apr 3 11:45:22 2023 +0200 Merge branch 'dev_varRBErobOpt' into dev_varRBErobOptPhantomBuilder commit 4d394f6 Author: Tobias Becher <[email protected]> Date: Mon Apr 3 10:49:36 2023 +0200 Delete matRad_createPhantomnew.m commit 51deb77 Author: Tobias Becher <[email protected]> Date: Mon Apr 3 10:47:03 2023 +0200 Added phantom builder Added folder for phantom builder and an example commit ab666aa Author: Tobias Becher <[email protected]> Date: Mon Apr 3 10:30:24 2023 +0200 Update .gitignore commit 0a03aee Author: Niklas Wahl <[email protected]> Date: Mon Feb 6 02:17:51 2023 +0100 fix path (cherry picked from commit ec57365) commit fe61134 Author: Niklas Wahl <[email protected]> Date: Mon Feb 6 02:11:54 2023 +0100 use preinstallex xvfb in linux test (cherry picked from commit cee9df6) commit 5a8c7f9 Author: Niklas Wahl <[email protected]> Date: Sat Feb 4 15:48:06 2023 +0100 Revert "adjust xvfb call in testing" This reverts commit 075402c. (cherry picked from commit 78c7b3d) commit 99336e0 Author: Niklas Wahl <[email protected]> Date: Sat Feb 4 15:43:05 2023 +0100 adjust xvfb call in testing (cherry picked from commit 075402c) commit d4acb02 Author: Niklas Wahl <[email protected]> Date: Sat Feb 4 15:10:49 2023 +0100 update scripts for github folder (cherry picked from commit ec4e8b2) commit 4b9a2fa Author: Niklas Wahl <[email protected]> Date: Sat Feb 4 15:06:49 2023 +0100 move scripts used during testing to github folder (cherry picked from commit 735976d) commit c3a673f Author: Niklas Wahl <[email protected]> Date: Fri Feb 3 18:47:36 2023 +0100 update workflow actions (cherry picked from commit bf5f4b9) commit 7060a3a Author: Niklas Wahl <[email protected]> Date: Fri Feb 3 16:27:44 2023 +0100 include rehash of file directory after linking the optimizer and added availability check (cherry picked from commit c509e82) commit ef95ac3 Author: Niklas Wahl <[email protected]> Date: Fri Feb 3 01:15:32 2023 +0100 option to disable function plot in optimization (cherry picked from commit 46445b2) commit 2c9b118 Author: Niklas Wahl <[email protected]> Date: Fri Feb 3 01:15:14 2023 +0100 update compiled linux optimizer (cherry picked from commit ffced04) commit 8e17c34 Author: Niklas Wahl <[email protected]> Date: Wed Feb 1 16:28:33 2023 +0100 update compiled optimizers with static linking (cherry picked from commit 73d6097) commit f0b7199 Author: Niklas Wahl <[email protected]> Date: Wed Feb 1 16:09:03 2023 +0100 updated optimizer compilation scripts (cherry picked from commit 5eff06f) commit c274d6d Author: Niklas Wahl <[email protected]> Date: Wed Feb 1 14:39:05 2023 +0100 Recompiled Octave 6.4.0 mex files for windows and linux, updated scripts and submodules (cherry picked from commit b353948) commit 4f436df Author: Niklas Wahl <[email protected]> Date: Mon Jan 30 18:00:41 2023 +0100 ompMC interface and MCsquare interface - fix eval function for obtaining preconfigured compiler flags (cherry picked from commit 7d788f7) commit add110e Author: Niklas Wahl <[email protected]> Date: Sun Jan 29 20:07:06 2023 +0100 Update tests.yml Switch to Ubuntu 22.04 and thus Octave 6 in test workflow (cherry picked from commit bdb95e9) commit b2ce690 Merge: cb6b04a 091f78b Author: Niklas Wahl <[email protected]> Date: Thu Mar 23 13:07:04 2023 +0100 Merge pull request e0404#602 from e0404/bug/601-bug-using-minmaxmeandose-constraint-on-structure-with-only-1-voxel-failes Fix error when constraints are applied to volumes which have 0 or 1 voxel. commit bcbc8b7 Author: Amit Bennan <[email protected]> Date: Thu Mar 23 12:00:26 2023 +0100 fix passes ct struct instead of ct.cubeHU to matRad_plotVoiContourSlice commit 375987a Author: Amit Bennan <[email protected]> Date: Thu Mar 23 11:33:56 2023 +0100 Error message rectified and all error and warning messages use matRad config messages commit c0c8353 Author: Niklas Wahl <[email protected]> Date: Tue Mar 7 01:50:55 2023 +0100 remove phsp-header commit 091f78b Author: Niklas Wahl <[email protected]> Date: Mon Feb 27 12:13:17 2023 +0100 fixes wrong detection of constraint bounds and jacobian structure when respective volume has 0 or only 1 voxel. commit 2ff9f09 Merge: 27ad9ff aab03e9 Author: Niklas Wahl <[email protected]> Date: Fri Feb 24 15:16:09 2023 +0100 Merge pull request e0404#599 from JenHardt/dev BUG: ssd calculation should use actual ray distance instead of SAD commit aab03e9 Merge: 9f4af93 27ad9ff Author: Hardt <[email protected]> Date: Tue Feb 7 15:47:12 2023 +0100 Merge branch 'dev' of https://github.com/JenHardt/matRad into dev commit 9f4af93 Author: Hardt <[email protected]> Date: Tue Feb 7 15:46:27 2023 +0100 small Bugfix commit 5084863 Author: Amit Bennan <[email protected]> Date: Fri Jan 27 10:32:23 2023 +0100 Code style comments addressed (MB review) commit b85ec2c Author: Niklas Wahl <[email protected]> Date: Wed Jan 25 23:04:36 2023 +0100 Downwards compatibility of biological model commit 5663803 Author: Niklas Wahl <[email protected]> Date: Wed Jan 25 18:11:35 2023 +0100 fix missing extractBetween function in Octave commit 64ce14c Merge: d3625aa 4e87571 Author: Niklas Wahl <[email protected]> Date: Tue Jan 24 15:55:11 2023 +0100 Merge pull request e0404#536 from HomolkaN/dev_varRBErobOpt_Update Extensive TOPAS workflow update: commit 260bd66 Merge: a1c8743 ecc6e0c Author: Amit Bennan <[email protected]> Date: Fri Jan 20 14:03:37 2023 +0100 Merge branch 'dev_classGUI_a' of https://github.com/amitantony/matRad into dev_classGUI commit d3625aa Author: Niklas Wahl <[email protected]> Date: Thu Jan 19 13:41:47 2023 +0100 Remove opengl software rendering query due to deprecation commit 3e427cf Author: Niklas Wahl <[email protected]> Date: Thu Jan 19 01:44:05 2023 +0100 Avoid erroring on opengl in matRadGUI commit ecc6e0c Merge: 8c9f8ee 671baea Author: Amit Bennan <[email protected]> Date: Wed Jan 4 13:03:51 2023 +0100 Merge branch 'dev_classGUI' into dev_classGUI_a commit 894211d Author: Niklas Wahl <[email protected]> Date: Wed Dec 21 18:34:02 2022 +0100 improve dicom import handling for RTPlan and RTDose commit 671baea Merge: 91cbc12 27ad9ff Author: Amit Bennan <[email protected]> Date: Tue Dec 20 13:31:01 2022 +0100 Merge branch 'dev' of https://github.com/e0404/matRad into dev_classGUI for Merge experiment commit 27ad9ff Merge: 3b781b6 cb6b04a Author: Niklas Wahl <[email protected]> Date: Tue Nov 29 20:29:38 2022 +0100 Merge branch 'master' into dev commit 8c9f8ee Author: amitantony <[email protected]> Date: Thu Nov 10 14:51:40 2022 +0100 documentation commit c711bdc Author: amitantony <[email protected]> Date: Fri Nov 4 19:19:26 2022 +0100 first working prototype commit 3fe5660 Author: amitantony <[email protected]> Date: Thu Oct 27 11:39:54 2022 +0200 Gamma Widget skeleton commit a1c8743 Author: Amit Bennan <[email protected]> Date: Thu Oct 27 11:38:59 2022 +0200 DVHStatswidget object stored in main gui commit 2d41f12 Author: Amit Bennan <[email protected]> Date: Mon Oct 24 13:36:12 2022 +0200 1. Documentation for newer widget functions 2. clean up of code 3. fully update DVH solution commit 3b781b6 Author: Niklas Wahl <[email protected]> Date: Thu Oct 20 00:01:08 2022 +0200 Update matRad_calcCubes.m Correct MU vector calculation commit 6db771e Merge: fea82a8 1b13404 Author: Niklas Wahl <[email protected]> Date: Wed Oct 5 17:04:51 2022 +0200 Merge branch 'master' into dev commit b80323c Merge: e4ad063 d8c58e0 Author: Amit Bennan <[email protected]> Date: Fri Jul 29 16:06:11 2022 +0200 Merge branch 'dev_classGUI_a' of https://github.com/amitantony/matRad into dev_classGUI_a commit e4ad063 Merge: a216bd1 c0a9f08 Author: Amit Bennan <[email protected]> Date: Fri Jul 29 16:05:59 2022 +0200 Merge branch 'dev_clean' into dev_classGUI_a : runs basic examples commit d8c58e0 Author: amitantony <[email protected]> Date: Fri Jul 29 14:26:47 2022 +0200 [bugfix] errors while running the basic matrad script commit a216bd1 Author: Amit Bennan <[email protected]> Date: Fri Jul 29 10:17:00 2022 +0200 [bug fix] DVH updates with the selected cube for display commit 657ef2b Merge: 13d35e0 d17ecb2 Author: amitLT <[email protected]> Date: Thu Jun 9 14:09:42 2022 +0200 Merge branch 'dev_classGUI_a' of https://github.com/amitantony/matRad into dev_classGUI_a commit d17ecb2 Author: amitantony <[email protected]> Date: Fri Apr 29 17:40:54 2022 +0200 Input Parser for DVH and statistics widget commit eae4a47 Author: amitantony <[email protected]> Date: Wed Apr 27 11:59:30 2022 +0200 bug fix : iso line update problem for "Saved Results" of ResultGUI in viewing widget commit 13d35e0 Author: amitLT <[email protected]> Date: Fri Apr 22 17:07:26 2022 +0200 encoding to UTF8 commit baa9182 Author: amitLT <[email protected]> Date: Thu Apr 21 13:02:15 2022 +0200 bug fix : enabling and disabling sequencing options commit 7204af4 Author: amitLT <[email protected]> Date: Mon Apr 4 18:05:02 2022 +0200 Added sequencing drop down menu to the GUI commit 16beca5 Author: amitLT <[email protected]> Date: Tue Mar 29 14:23:18 2022 +0200 update of new referencing to sequencing in matRad and example scripts commit 5f4da57 Author: amitLT <[email protected]> Date: Tue Mar 29 14:06:10 2022 +0200 Sequencing wrapper function that accepts highlevel matRad structures commit cb5a94c Author: amitLT <[email protected]> Date: Thu Mar 24 09:43:13 2022 +0100 Fixes for couch angle update, (cst,ct ) loaded message, CBTplanning commit 91cbc12 Author: Niklas Wahl <[email protected]> Date: Fri Dec 10 16:15:17 2021 +0100 some fixes in the class-based GUI commit b3cd841 Merge: 5137fcc f725b01 Author: Niklas Wahl <[email protected]> Date: Mon Feb 8 15:01:31 2021 +0100 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit f725b01 Merge: 6b50cf5 51f8428 Author: Niklas Wahl <[email protected]> Date: Mon Feb 8 14:34:26 2021 +0100 Merge pull request e0404#486 from palkma/dev_classGUI added tooltips to GUI elements commit 51f8428 Author: Palkowitsch <[email protected]> Date: Tue Feb 2 16:19:11 2021 +0100 added tooltips commit 5137fcc Merge: 1996919 d930c3e Author: Niklas Wahl <[email protected]> Date: Thu Dec 24 13:39:51 2020 +0100 Merge remote-tracking branch 'origin/master' into dev_classGUI # Conflicts: # MatRad_Config.m # dicom/@matRad_DicomExporter/matRad_DicomExporter.m # dicom/matRad_scanDicomImportFolder.m # matRadGUI.m # matRad_showDVH.m # plotting/matRad_plotIsoDoseLines.m commit 1996919 Merge: 6b50cf5 4399711 Author: Niklas Wahl <[email protected]> Date: Mon Oct 5 11:17:34 2020 +0200 Merge branch 'dev_classGUI' of https://github.com/nellyabbani/matRad into dev_classGUI commit 4399711 Author: nelly.abbani <[email protected]> Date: Fri Aug 28 10:40:18 2020 +0200 uiwrapper function commit 6b50cf5 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 17:02:38 2020 +0200 fix tests commit 434422d Merge: b4c7783 1463811 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 16:26:46 2020 +0200 Merge branch 'dev' of https://github.com/e0404/matRad into dev_classGUI commit b4c7783 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 16:26:10 2020 +0200 changes to gui calls commit 38c7131 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 15:46:46 2020 +0200 more old files removal commit b5d48cf Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 15:44:51 2020 +0200 removal of old logo files commit 736b2f2 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 15:43:39 2020 +0200 gui fixes and removal of old files commit a3ba0c2 Author: Niklas Wahl <[email protected]> Date: Thu Aug 20 18:38:18 2020 +0200 More consistency and compatability updates commit dfd8e9a Author: Niklas Wahl <[email protected]> Date: Wed Aug 19 18:43:47 2020 +0200 modifications to Widget structure and layout, consistent colors, etc commit adac165 Author: Niklas Wahl <[email protected]> Date: Wed Aug 19 10:26:50 2020 +0200 tweaks to the gui widgets, new EventData-based class to explicitly state changed workspace variables commit 6e19dfa Author: Niklas Wahl <[email protected]> Date: Wed Aug 19 10:25:09 2020 +0200 crop logo a little commit 15e4cd8 Author: Niklas Wahl <[email protected]> Date: Wed Aug 19 10:24:37 2020 +0200 remove some old gui functions commit 9bf703f Author: Niklas Wahl <[email protected]> Date: Fri Aug 7 12:12:58 2020 +0200 Move matRadGUI to main folder again commit f271346 Author: Niklas Wahl <[email protected]> Date: Fri Aug 7 12:12:21 2020 +0200 fix createLayout for dicom import commit 52e8fe2 Author: Niklas Wahl <[email protected]> Date: Thu Jul 30 14:21:50 2020 +0200 Fix paths and maximize matRadGUI commit d0885c4 Merge: 36a149d ca4044b Author: Niklas Wahl <[email protected]> Date: Thu Jul 30 11:59:33 2020 +0200 Merge branch 'dev_classGUI' of https://github.com/nellyabbani/matRad into dev_classGUI # Conflicts: # gui/matRadGUI.m commit ca4044b Author: nellyabbani <[email protected]> Date: Wed Jul 29 20:33:14 2020 +0200 Split DVH widget into 2 widgets. Add exportDicom widget. +other small fixes commit 36a149d Author: Niklas Wahl <[email protected]> Date: Wed Jul 29 17:44:10 2020 +0200 changes to avoid crash in Octave commit 5694ffd Author: nellyabbani <[email protected]> Date: Tue Jun 30 10:31:45 2020 +0200 Further improvements to the GUI widgets commit 4f69fa4 Author: nellyabbani <[email protected]> Date: Mon Jun 15 13:11:40 2020 +0200 Small fixes on the GUI widgets commit fe2abdc Author: nellyabbani <[email protected]> Date: Fri Jun 12 17:15:08 2020 +0200 Merge dev_classGUI with master class commit a89edfe Merge: 5620dbe c22da7d Author: nellyabbani <[email protected]> Date: Fri Jun 12 15:59:35 2020 +0200 Merge branch 'master' into dev_classGUI # Conflicts: # dicom/@matRad_importDicomWidget/createLayout.m # dicom/@matRad_importDicomWidget/matRad_importDicomWidget.m # dicom/DKFZ_Logo.png # dicom/gui/matRad_importDicomGUI_LayoutFcn.m # dicom/gui/matRad_importDicomGUI_gui_mainFcn.m # dicom/matRad_checkEnvDicomRequirements.m # dicom/matRad_createCst.m # dicom/matRad_importDicomGUI.fig.bak # dicom/matrad_logo.png # dicomImport/DKFZ_Logo.png # dicomImport/matrad_logo.png # gfx/DKFZ_Logo.png # gfx/matrad_logo.png # matRadGUI.m # matRad_fluenceOptimization.m # matRad_showQualityIndicators.m commit 5620dbe Author: nellyabbani <[email protected]> Date: Fri Jun 12 13:54:32 2020 +0200 Update to refresh the GUI widgets when clicked + implementation of notify and listeners concepts in octave commit 71e397e Author: nellyabbani <[email protected]> Date: Mon Jun 8 09:27:35 2020 +0200 Functioning version of all the GUI widgets commit 4abd14e Author: nellyabbani <[email protected]> Date: Fri May 1 13:06:35 2020 +0200 Scripted GUI widgets commit 3501e99 Author: nellyabbani <[email protected]> Date: Thu Apr 2 18:03:56 2020 +0200 Scripted GUI workflow, plan, and optimization widgets commit 986dbb6 Merge: 4045a4b 833e582 Author: nellyabbani <[email protected]> Date: Tue Mar 3 16:18:17 2020 +0100 Merge remote-tracking branch 'origin/dev_classGUI' into dev_classGUI # Conflicts: # gui/matRad_PlanWidget.m # gui/matRad_WorkflowWidget.m commit 4045a4b Author: nellyabbani <[email protected]> Date: Tue Mar 3 16:13:38 2020 +0100 Initial fix to the widgets commit 833e582 Author: Nabe Al Hasnawi <[email protected]> Date: Fri Feb 28 13:43:55 2020 +0100 Widget Default Values and Names commit 0db80e1 Author: Nabe Al Hasnawi <[email protected]> Date: Tue Feb 25 12:07:10 2020 +0100 matRad gui icons as mat file commit 922c349 Author: Nabe Al Hasnawi <[email protected]> Date: Tue Feb 25 12:04:09 2020 +0100 First developments on independent GUI widgets commit b926ed9 Author: Nabe <[email protected]> Date: Tue Dec 10 11:27:12 2019 +0100 Class based Widgets for import & export with shared import/export GUI commit f55a46a Merge: 6df1b0f d66cf32 Author: Niklas Wahl <[email protected]> Date: Fri Aug 16 16:13:11 2019 +0200 Merge branch 'dev' of https://github.com/wahln/matRad into dev_newScriptedGUI commit 6df1b0f Author: Niklas Wahl <[email protected]> Date: Fri Aug 16 16:12:22 2019 +0200 Exported the IO gui's and added the dicom external GUI files commit b07c70c Author: Niklas Wahl <[email protected]> Date: Tue Aug 13 12:42:03 2019 +0200 fix for missing mat File containing GUI parmeters (is exported from guide). commit 1ae350a Merge: 7ee4580 81e4545 Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 20:13:02 2019 +0200 Merge branch 'dev' of https://github.com/e0404/matRad into dev_newScriptedGUI commit 7ee4580 Merge: ecbcbc1 81332ae Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 20:09:15 2019 +0200 Merge branch 'dev_newScriptedGUI' of https://github.com/wahln/matRad into dev_newScriptedGUI # Conflicts: # matRadGUI_export.m # tools/matRad_fixExportedGUI.m commit 81332ae Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 19:00:03 2019 +0200 new figure files and backup commit e8da6d6 Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 18:56:34 2019 +0200 fix for the dicom import commit 78fd927 Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 18:38:16 2019 +0200 changes to the GUI so that exported main and layout fcn are used commit fa937ee Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 14:04:03 2019 +0200 improves matRadGUI compability and fixes display of the new obejctive table commit df2ca61 Author: Niklas Wahl <[email protected]> Date: Thu Aug 8 12:10:56 2019 +0200 octave compatible dicom import commit ecbcbc1 Author: Niklas Wahl <[email protected]> Date: Wed Jun 12 23:28:26 2019 +0200 fides to the exported GUI commit 65a91ca Author: Niklas Wahl <[email protected]> Date: Tue Jun 4 12:50:54 2019 +0200 script to remove unnecessary options for graphics options commit 2d7b739 Author: Niklas Wahl <[email protected]> Date: Fri May 24 21:08:39 2019 +0200 initial export with line fix
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commit 3215c95 Merge: ccc73dc 5263869 Author: Niklas Wahl <[email protected]> Date: Wed Sep 6 11:28:32 2023 +0200 Merge branch 'dev' into dev_varRBErobOpt commit ccc73dc Merge: e915ed6 bdc7567 Author: Niklas Wahl <[email protected]> Date: Wed Sep 6 11:22:34 2023 +0200 Merge pull request e0404#652 from amitantony/dev_varRBErobOpt_GUI class based GUI capabilities for the var RBE plans commit bdc7567 Author: amitantony <[email protected]> Date: Mon Sep 4 17:02:31 2023 +0200 bugfix for mistaken function call in plotslicewrapper commit 50b0805 Author: amitantony <[email protected]> Date: Fri Sep 1 11:42:25 2023 +0200 Robustness functionality commit 5263869 Author: Niklas Wahl <[email protected]> Date: Thu Aug 31 14:36:15 2023 +0200 fix capital letter in MatRad_Config in CT dicom import commit 0e76650 Author: Niklas Wahl <[email protected]> Date: Thu Aug 31 14:35:45 2023 +0200 fix missing env switch in dicom import commit 0040374 Merge: fe7fe40 51734ac Author: Niklas Wahl <[email protected]> Date: Thu Aug 31 11:46:51 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into pr/652 # Conflicts: # dicom/matRad_importDicomRTPlan.m # dicom/matRad_scanDicomImportFolder.m # gui/widgets/matRad_OptimizationWidget.m # gui/widgets/matRad_PlanWidget.m # matRad.m commit a5a8e62 Merge: 2ff9f09 51734ac Author: Niklas Wahl <[email protected]> Date: Thu Aug 31 11:02:32 2023 +0200 Merge pull request e0404#646 from e0404/dev_classGUI class GUI for dev commit fe7fe40 Author: Amit Bennan <[email protected]> Date: Thu Aug 31 10:56:35 2023 +0200 clean up code commit 629f91d Author: amitantony <[email protected]> Date: Tue Aug 29 16:53:38 2023 +0200 Using Scenario based optimization for the gui commit 51734ac Merge: 33f3a1d 38a43ce Author: Amit Bennan <[email protected]> Date: Fri Aug 4 13:04:06 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit 33f3a1d Author: Amit Bennan <[email protected]> Date: Fri Aug 4 13:03:07 2023 +0200 Bug fix for Viewing widget and Viewer option updates on changes to pln or workflow options commit 38a43ce Author: Niklas Wahl <[email protected]> Date: Thu Aug 3 15:22:28 2023 -0700 some more cleanup and default positioning of widgets commit 27b01e8 Author: Niklas Wahl <[email protected]> Date: Thu Aug 3 14:59:34 2023 -0700 fix for obtaining environment information commit 68b8c3a Author: Niklas Wahl <[email protected]> Date: Thu Aug 3 14:37:06 2023 -0700 some cleanup commit 43e086e Author: Niklas Wahl <[email protected]> Date: Thu Aug 3 14:13:19 2023 -0700 deprecate java warning commit 37c0ff8 Author: Amit Bennan <[email protected]> Date: Thu Aug 3 18:57:09 2023 +0200 1. matRad.m to original example setting, 2. MainGUI Documentation, 3. missing documentation commit 6e03ecf Merge: 0991137 92bc88d Author: Amit Bennan <[email protected]> Date: Wed Aug 2 22:41:37 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit 0991137 Author: Amit Bennan <[email protected]> Date: Wed Aug 2 22:41:03 2023 +0200 'isOctave' checks replaced with 'matRad_Config object.isOctave' commit 92bc88d Author: amitantony <[email protected]> Date: Tue Aug 1 15:20:45 2023 +0200 Documentation and TODO update commit bfaf5f1 Author: amitantony <[email protected]> Date: Fri Jul 28 17:11:48 2023 +0200 Comments and documentation corrections commit aaec9ba Merge: 41e2a65 5385ba4 Author: Niklas Wahl <[email protected]> Date: Tue Jul 25 16:10:29 2023 +0200 Merge pull request e0404#653 from amitantony/dev_classGUI_feature Feature to autofill the couch angles commit cf4fe0b Author: amitantony <[email protected]> Date: Tue Jul 25 09:01:03 2023 +0200 Default Values for BioParam commit 5385ba4 Author: amitantony <[email protected]> Date: Tue Jul 25 08:44:39 2023 +0200 Feature to autofill the couch angles to gantry angle size if single value of couch angle is entered commit 78cd622 Author: amitantony <[email protected]> Date: Mon Jul 24 18:29:50 2023 +0200 carbon pop up bug commit 9c7a91d Author: amitantony <[email protected]> Date: Mon Jul 24 18:26:51 2023 +0200 pop up bug for bio model commit 5b35787 Author: amitantony <[email protected]> Date: Mon Jul 24 17:53:51 2023 +0200 Merge mistake Rectified commit 322ca69 Merge: 522569c 41e2a65 Author: amitantony <[email protected]> Date: Mon Jul 24 17:37:43 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_varRBErobOpt_GUI commit 522569c Merge: f3ea5c8 e915ed6 Author: amitantony <[email protected]> Date: Mon Jul 24 13:19:42 2023 +0200 Merge branch 'dev_varRBErobOpt' of https://github.com/e0404/matRad into dev_varRBErobOpt_GUI commit f3ea5c8 Merge: 87832ed ca479fe Author: amitantony <[email protected]> Date: Mon Jul 24 13:18:41 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_varRBErobOpt_GUI Runs Basic Var RBE plans in GUI commit e915ed6 Merge: ce9179d 9cc05a8 Author: Niklas Wahl <[email protected]> Date: Fri Jul 21 16:59:52 2023 +0200 Merge pull request e0404#650 from piastammer/dev_varRBErobOpt minor bug fix and small documentation changes commit ce9179d Merge: 32bff43 6ef2c24 Author: Niklas Wahl <[email protected]> Date: Fri Jul 21 16:57:40 2023 +0200 Merge pull request e0404#649 from remocristoforetti/dev_varRBErobOpt_bugFix minor bug fix commit 9cc05a8 Author: Pia Stammer <[email protected]> Date: Fri Jul 21 16:53:47 2023 +0200 added warning and TODO for single bixel example commit 6ef2c24 Author: remocristoforetti <[email protected]> Date: Fri Jul 21 16:44:19 2023 +0200 minor change in generic photon machine machine.meta.name turned into machine.meta.machine commit 41e2a65 Author: Amit Bennan <[email protected]> Date: Fri Jul 21 16:42:27 2023 +0200 bugfix for error on loading first case commit ad9f5f9 Author: remocristoforetti <[email protected]> Date: Fri Jul 21 16:34:06 2023 +0200 error printout message fix in matRad_multScen commit 32bff43 Merge: 87832ed a6f7004 Author: Niklas Wahl <[email protected]> Date: Fri Jul 21 15:09:43 2023 +0200 Merge pull request e0404#624 from tobiasbecher/dev_Pareto Small changes to where penalties are applied commit ca479fe Author: Amit Bennan <[email protected]> Date: Fri Jul 21 14:45:33 2023 +0200 set tissue warning commit 42a4edc Author: Pia Stammer <[email protected]> Date: Fri Jul 21 14:44:01 2023 +0200 added TODOs to check commented lines commit da50e91 Author: Amit Bennan <[email protected]> Date: Fri Jul 21 14:30:33 2023 +0200 test if pln.propSeq exists ( bug from example 1 with GUI) commit 59e3e43 Author: Pia Stammer <[email protected]> Date: Fri Jul 21 14:22:15 2023 +0200 removed redundant copyright statements & added Todos for documenation commit e400ee9 Author: Pia Stammer <[email protected]> Date: Fri Jul 21 13:56:22 2023 +0200 Set default BAMStoIsoDist for topas machine file commit f497b16 Author: Amit Bennan <[email protected]> Date: Fri Jul 21 11:56:40 2023 +0200 bugfix: 1. fixed reinitialization parameter changes, 2. fixed faulty overwrite of VOIPlotFlag that caused skipping contours commit 87832ed Merge: acd73e7 2958dc4 Author: Niklas Wahl <[email protected]> Date: Thu Jul 20 11:07:55 2023 +0200 Merge pull request e0404#610 from tobiasbecher/dev_varRBErobOptPhantomBuilder Phantom builder added commit 2958dc4 Merge: 03ec1a0 acd73e7 Author: Niklas Wahl <[email protected]> Date: Thu Jul 20 10:01:53 2023 +0200 Merge branch 'dev_varRBErobOpt' into pr/610 # Conflicts: # .gitignore commit 03ec1a0 Author: Niklas Wahl <[email protected]> Date: Thu Jul 20 10:00:26 2023 +0200 reorganization of builder files commit acd73e7 Merge: c9acdc5 a83b691 Author: Niklas Wahl <[email protected]> Date: Wed Jul 19 17:15:39 2023 +0200 Merge branch 'dev_varRBErobOpt' of https://github.com/e0404/matRad into dev_varRBErobOpt commit c9acdc5 Author: Niklas Wahl <[email protected]> Date: Wed Jul 19 17:15:33 2023 +0200 Update of base data file for estimate of energy spectrum commit 2f00898 Author: Tobias Becher <[email protected]> Date: Mon Jul 10 12:47:38 2023 +0200 Final updates Final changes to the phantom builder commit a83b691 Merge: d5bf94a f2e62b6 Author: Niklas Wahl <[email protected]> Date: Mon Jul 10 10:13:15 2023 +0200 Merge pull request e0404#642 from JenHardt/dev_varRBErobOpt IsoCenterShift BugFix commit f2e62b6 Author: JenHardt <[email protected]> Date: Fri Jul 7 13:56:16 2023 +0200 IsoCenterShift BugFix commit bca2260 Author: Tobias Becher <[email protected]> Date: Fri Jun 30 14:41:50 2023 +0200 Update matRad_runTests.m commit d474f09 Author: Tobias Becher <[email protected]> Date: Fri Jun 30 14:33:25 2023 +0200 Removed indexing of VOI VOI are no longer assigned an index on initialization. -> No need to clear all at the start of a script if rerunning commit c12f5e8 Author: Tobias Becher <[email protected]> Date: Fri Jun 30 14:10:55 2023 +0200 Fixed geometry issues Fixed issues with the coordinate system commit a6f7004 Author: Tobias Becher <[email protected]> Date: Fri Jun 30 10:24:52 2023 +0200 Slack parameter changes - Changed epsilon variable name to slackParameter - Now parameter of constraint - Removed objective funtion to turn into constraint commit c91799c Merge: 94e701c 4177468 Author: amitantony <[email protected]> Date: Fri Jun 30 10:03:04 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit dedf147 Author: Tobias Becher <[email protected]> Date: Wed Jun 28 13:37:18 2023 +0200 Some changes Some changes made for pull request. Commit also tests if server tests now run through. commit d5bf94a Author: Niklas Wahl <[email protected]> Date: Wed Jun 28 10:18:28 2023 +0200 allows to compute the bixel dose when cutoff was not precomputed by setting the compensation factor to 1 commit 83fc8a6 Author: Niklas Wahl <[email protected]> Date: Wed Jun 28 10:17:45 2023 +0200 emittance base data format now allows one emittance per focus commit 5fda67e Merge: 99eaa34 bffb834 Author: Niklas Wahl <[email protected]> Date: Wed Jun 21 10:56:08 2023 +0200 Merge pull request e0404#637 from remocristoforetti/dev_varRBErobOpt_bugFix_MCemittanceBaseData bugFix in MCemittanceBaseData for negative distances commit bffb834 Author: RemoCristoforetti <[email protected]> Date: Wed Jun 21 10:49:28 2023 +0200 bugFix negative distance for spot size correction in air. commit 99eaa34 Author: Niklas Wahl <[email protected]> Date: Wed Jun 21 10:10:19 2023 +0200 Fix matRad_MCemittanceBaseData.m Replaced Inf with realmax so interpolation does not error commit 3e7952a Author: Niklas Wahl <[email protected]> Date: Wed Jun 7 13:19:31 2023 +0200 AppendResultGUI now creates consistent fieldnames commit c5dd9eb Author: Niklas Wahl <[email protected]> Date: Tue Jun 6 18:32:40 2023 +0200 appendresultgui now either overwrites or always appends the identifier commit 1bab14d Author: Niklas Wahl <[email protected]> Date: Tue Jun 6 18:32:21 2023 +0200 fix for the spot size air MCS correction commit 6a746ee Author: Niklas Wahl <[email protected]> Date: Tue Jun 6 14:13:20 2023 +0200 fix variable names in example 12 commit a7e72fa Author: Niklas Wahl <[email protected]> Date: Tue Jun 6 14:13:01 2023 +0200 add empirical correction for MCS in air when approximating beam model commit 1a80ea9 Author: Tobias Becher <[email protected]> Date: Mon Jun 5 11:01:52 2023 +0200 Name change for constraints Changed the name for created constraints in the optimization commit 94e701c Author: amitantony <[email protected]> Date: Fri Jun 2 15:25:13 2023 +0200 1. avoid sequencing warning everytime we optimize particles, 2. IGNORED as a tissue type, 3. fix for "ignoring legend entries" warning , 4. DVHStat naming bugfix commit 4177468 Merge: 2273867 893f9b3 Author: Niklas Wahl <[email protected]> Date: Thu Jun 1 14:02:31 2023 +0200 Merge pull request e0404#631 from amitantony/bug/DVHWidgetFix Bug/dvh widget fix commit f59722c Merge: 893f9b3 2273867 Author: amitantony <[email protected]> Date: Thu Jun 1 12:38:18 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit 893f9b3 Author: amitantony <[email protected]> Date: Wed May 31 15:58:13 2023 +0200 Consistant naming fix commit ae58086 Author: amitantony <[email protected]> Date: Wed May 31 15:45:17 2023 +0200 more compact application of recenter commit 2273867 Merge: 37c2f02 602bae6 Author: Amit Bennan <[email protected]> Date: Wed May 31 15:36:47 2023 +0200 Merge pull request e0404#626 from amitantony/dev_classGUI_matPatientLoadBug Dev class GUI .mat patient load bug commit 8c2d20e Author: amitantony <[email protected]> Date: Wed May 31 15:34:18 2023 +0200 feature: Recentering to iso center button commit 602bae6 Author: amitantony <[email protected]> Date: Tue May 30 18:01:48 2023 +0200 fix for test failing in matRad.m commit 48ca910 Author: Niklas Wahl <[email protected]> Date: Tue May 30 16:35:22 2023 +0200 revert explicit start of parpool in testing pipeline commit 871e0b6 Merge: 153ba54 a531a2d Author: Niklas Wahl <[email protected]> Date: Tue May 30 16:27:48 2023 +0200 Merge branch 'dev_varRBErobOpt' of https://github.com/e0404/matRad into dev_varRBErobOpt commit 153ba54 Author: Niklas Wahl <[email protected]> Date: Tue May 30 16:25:33 2023 +0200 explicit start of parallel pool in testing workflow commit 7561424 Merge: ec8fd78 37c2f02 Author: amitantony <[email protected]> Date: Tue May 30 15:07:11 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI_matPatientLoadBug commit a531a2d Author: Niklas Wahl <[email protected]> Date: Tue May 30 13:51:31 2023 +0200 Fix wrong test folder in tests.yml commit d2da6e4 Merge: 8f03510 d6ea09a Author: Niklas Wahl <[email protected]> Date: Tue May 30 13:42:19 2023 +0200 Merge branch 'master' of https://github.com/e0404/matRad into dev_varRBErobOpt # Conflicts: # .github/workflows/tests.yml # MatRad_Config.m # matRad_fluenceOptimization.m # matRad_rc.m # ompMC/matRad_compileOmpMCInterface.m # optimization/optimizer/compile_ipopt_minGW_octave640.sh commit d6ea09a Merge: 689eabe beaee4e Author: Niklas Wahl <[email protected]> Date: Tue May 30 13:27:32 2023 +0200 Merge pull request e0404#628 from e0404/hotfix/fixTestEnvironment Hotfix to the test pipeline on the master branch commit beaee4e Merge: 2f42625 689eabe Author: Niklas Wahl <[email protected]> Date: Fri May 26 19:14:53 2023 +0200 Merge branch 'master' into hotfix/fixTestEnvironment commit 37c2f02 Merge: 5984075 72d5d3c Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:58:18 2023 +0200 Merge pull request e0404#625 from amitantony/dev_classGUI_a_DicomImportBug Dev class GUI a dicom import bug commit 72d5d3c Merge: ef55778 5984075 Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:57:28 2023 +0200 Merge branch 'dev_classGUI' into dev_classGUI_a_DicomImportBug commit 5984075 Merge: 671baea 1f7bc74 Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:55:48 2023 +0200 Merge pull request e0404#627 from amitantony/dev_classGUI_IsoDoseBugFix BUGFIX: Iso dose contour not updated with changing selectedDisplayOption commit 2f42625 Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:44:48 2023 +0200 Update job name for octave commit 0fe09aa Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:35:04 2023 +0200 Update job name commit 2397e3f Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:23:04 2023 +0200 Add latest supported release options for tests to cover for release changes commit ef55778 Author: amitantony <[email protected]> Date: Fri May 26 16:15:48 2023 +0200 Class GUI dicom import bugs resolve to return atleast 1 DICOM patient case commit fa26d01 Author: Tobias Becher <[email protected]> Date: Fri May 26 16:15:06 2023 +0200 Small changes to where penalties are applied Moved the penalties from the objectives to the objective function. Also added an option for objective constraint. commit ec8fd78 Author: Amit Bennan <[email protected]> Date: Fri May 26 14:30:12 2023 +0200 bug fix on first load of patient case commit 689eabe Merge: f7bded9 46d5f2c Author: Amit Bennan <[email protected]> Date: Fri May 26 11:35:38 2023 +0200 Merge pull request e0404#608 from e0404/bug/606-matrad_plotvoicontourslice-tries-to-access-ct-as-cell-bug fix passes ct struct instead of ct.cubeHU to matRad_plotVoiContourSlice commit 2bca404 Author: Tobias Becher <[email protected]> Date: Fri May 26 11:27:42 2023 +0200 Compatibility with test script Added phantomBuilder example to test script and rounding added in BOX phantom assignment commit 1f7bc74 Author: amitantony <[email protected]> Date: Fri May 26 11:09:50 2023 +0200 Bugfix for : Iso dose contour not updated with changing selectedDisplayOption commit 8f03510 Merge: 58362ac 82742b0 Author: Niklas Wahl <[email protected]> Date: Tue May 23 18:25:09 2023 +0200 Merge pull request e0404#621 from tobiasbecher/dev_varRBErobOptGradient Bugfix for RBExD gradient calculation. commit 82742b0 Author: Tobias Becher <[email protected]> Date: Tue May 16 10:27:55 2023 +0200 Update .gitignore commit 19799c8 Author: Tobias Becher <[email protected]> Date: Tue May 16 10:24:27 2023 +0200 Fixed gradient Bug commit 58362ac Author: Niklas Wahl <[email protected]> Date: Wed May 10 12:08:26 2023 +0200 correct for reading x and y spot sizes from emittance data in topas interface commit 380b740 Author: Tobias Becher <[email protected]> Date: Fri Apr 28 16:19:12 2023 +0200 Update matRad_runTests.m Removing new example1 for now from unit tests commit 497e036 Author: Tobias Becher <[email protected]> Date: Fri Apr 28 15:56:33 2023 +0200 Final changes Renamed matRad_VOIVolume to matRad_PhantomVOIVolume and changed example files. commit 46d5f2c Merge: 539dc94 f7bded9 Author: Niklas Wahl <[email protected]> Date: Fri Apr 28 15:35:17 2023 +0200 Merge branch 'master' into bug/606-matrad_plotvoicontourslice-tries-to-access-ct-as-cell-bug commit f7bded9 Merge: 03cc52f 7456efc Author: Niklas Wahl <[email protected]> Date: Fri Apr 28 15:34:40 2023 +0200 Merge pull request e0404#607 from e0404/bug/605-bug-warning-and-error-messages-in-matrad_readnrrd-fail-string-concatenation-is-wrong-when-linecontent-is-an-empty-cell Error message rectified commit 539dc94 Merge: 711dc58 03cc52f Author: Amit Bennan <[email protected]> Date: Fri Apr 28 15:23:39 2023 +0200 Merge branch 'master' into bug/606-matrad_plotvoicontourslice-tries-to-access-ct-as-cell-bug commit 7456efc Merge: 8fb0fb8 03cc52f Author: Niklas Wahl <[email protected]> Date: Fri Apr 28 15:01:26 2023 +0200 Merge branch 'master' into bug/605-bug-warning-and-error-messages-in-matrad_readnrrd-fail-string-concatenation-is-wrong-when-linecontent-is-an-empty-cell commit 03cc52f Merge: b2ce690 bb41c69 Author: Niklas Wahl <[email protected]> Date: Fri Apr 28 14:59:51 2023 +0200 Merge pull request e0404#617 from SakuMyl/master Check installation of image processing toolbox in DICOM import commit bb41c69 Author: Saku Myllymäki <[email protected]> Date: Fri Apr 28 14:23:24 2023 +0300 check installation of image processing toolbox commit 8fb0fb8 Author: Amit Bennan <[email protected]> Date: Thu Apr 20 15:21:47 2023 +0200 displays parsed line in warning message commit 711dc58 Merge: bcbc8b7 b2ce690 Author: Amit Bennan <[email protected]> Date: Tue Apr 11 11:41:53 2023 +0200 Merge branch 'master' into bug/606-matrad_plotvoicontourslice-tries-to-access-ct-as-cell-bug commit 85f7cda Author: Niklas Wahl <[email protected]> Date: Thu Apr 6 17:06:51 2023 +0200 fix problem with constant property containing filepath commit d6238cd Author: Niklas Wahl <[email protected]> Date: Wed Apr 5 14:59:25 2023 +0200 Update tests.yml Update apt before octave install commit eab8fc2 Merge: 375987a b2ce690 Author: Niklas Wahl <[email protected]> Date: Wed Apr 5 14:46:18 2023 +0200 Merge branch 'master' into bug/605-bug-warning-and-error-messages-in-matrad_readnrrd-fail-string-concatenation-is-wrong-when-linecontent-is-an-empty-cell commit b10d896 Author: Tobias Becher <[email protected]> Date: Tue Apr 4 11:46:17 2023 +0200 Changed number of example file commit 48786f3 Author: Tobias Becher <[email protected]> Date: Tue Apr 4 11:35:05 2023 +0200 Updates to the phantom - Moved ct creation to phantom builder - ct and cst are now private and can be received by calling getctst - Added documentaion to phantom builder functions - Modified example file to incorporate changes commit cf1e27b Author: Tobias Becher <[email protected]> Date: Tue Apr 4 11:32:06 2023 +0200 Updates to VOI related classes Renamed Cubic and Spherical VOI classes Added option to set HU for VOI commit ba69a3b Merge: 4d394f6 b85ec2c Author: Niklas Wahl <[email protected]> Date: Mon Apr 3 11:45:22 2023 +0200 Merge branch 'dev_varRBErobOpt' into dev_varRBErobOptPhantomBuilder commit 4d394f6 Author: Tobias Becher <[email protected]> Date: Mon Apr 3 10:49:36 2023 +0200 Delete matRad_createPhantomnew.m commit 51deb77 Author: Tobias Becher <[email protected]> Date: Mon Apr 3 10:47:03 2023 +0200 Added phantom builder Added folder for phantom builder and an example commit ab666aa Author: Tobias Becher <[email protected]> Date: Mon Apr 3 10:30:24 2023 +0200 Update .gitignore commit 0a03aee Author: Niklas Wahl <[email protected]> Date: Mon Feb 6 02:17:51 2023 +0100 fix path (cherry picked from commit ec57365) commit fe61134 Author: Niklas Wahl <[email protected]> Date: Mon Feb 6 02:11:54 2023 +0100 use preinstallex xvfb in linux test (cherry picked from commit cee9df6) commit 5a8c7f9 Author: Niklas Wahl <[email protected]> Date: Sat Feb 4 15:48:06 2023 +0100 Revert "adjust xvfb call in testing" This reverts commit 075402c. (cherry picked from commit 78c7b3d) commit 99336e0 Author: Niklas Wahl <[email protected]> Date: Sat Feb 4 15:43:05 2023 +0100 adjust xvfb call in testing (cherry picked from commit 075402c) commit d4acb02 Author: Niklas Wahl <[email protected]> Date: Sat Feb 4 15:10:49 2023 +0100 update scripts for github folder (cherry picked from commit ec4e8b2) commit 4b9a2fa Author: Niklas Wahl <[email protected]> Date: Sat Feb 4 15:06:49 2023 +0100 move scripts used during testing to github folder (cherry picked from commit 735976d) commit c3a673f Author: Niklas Wahl <[email protected]> Date: Fri Feb 3 18:47:36 2023 +0100 update workflow actions (cherry picked from commit bf5f4b9) commit 7060a3a Author: Niklas Wahl <[email protected]> Date: Fri Feb 3 16:27:44 2023 +0100 include rehash of file directory after linking the optimizer and added availability check (cherry picked from commit c509e82) commit ef95ac3 Author: Niklas Wahl <[email protected]> Date: Fri Feb 3 01:15:32 2023 +0100 option to disable function plot in optimization (cherry picked from commit 46445b2) commit 2c9b118 Author: Niklas Wahl <[email protected]> Date: Fri Feb 3 01:15:14 2023 +0100 update compiled linux optimizer (cherry picked from commit ffced04) commit 8e17c34 Author: Niklas Wahl <[email protected]> Date: Wed Feb 1 16:28:33 2023 +0100 update compiled optimizers with static linking (cherry picked from commit 73d6097) commit f0b7199 Author: Niklas Wahl <[email protected]> Date: Wed Feb 1 16:09:03 2023 +0100 updated optimizer compilation scripts (cherry picked from commit 5eff06f) commit c274d6d Author: Niklas Wahl <[email protected]> Date: Wed Feb 1 14:39:05 2023 +0100 Recompiled Octave 6.4.0 mex files for windows and linux, updated scripts and submodules (cherry picked from commit b353948) commit 4f436df Author: Niklas Wahl <[email protected]> Date: Mon Jan 30 18:00:41 2023 +0100 ompMC interface and MCsquare interface - fix eval function for obtaining preconfigured compiler flags (cherry picked from commit 7d788f7) commit add110e Author: Niklas Wahl <[email protected]> Date: Sun Jan 29 20:07:06 2023 +0100 Update tests.yml Switch to Ubuntu 22.04 and thus Octave 6 in test workflow (cherry picked from commit bdb95e9) commit b2ce690 Merge: cb6b04a 091f78b Author: Niklas Wahl <[email protected]> Date: Thu Mar 23 13:07:04 2023 +0100 Merge pull request e0404#602 from e0404/bug/601-bug-using-minmaxmeandose-constraint-on-structure-with-only-1-voxel-failes Fix error when constraints are applied to volumes which have 0 or 1 voxel. commit bcbc8b7 Author: Amit Bennan <[email protected]> Date: Thu Mar 23 12:00:26 2023 +0100 fix passes ct struct instead of ct.cubeHU to matRad_plotVoiContourSlice commit 375987a Author: Amit Bennan <[email protected]> Date: Thu Mar 23 11:33:56 2023 +0100 Error message rectified and all error and warning messages use matRad config messages commit c0c8353 Author: Niklas Wahl <[email protected]> Date: Tue Mar 7 01:50:55 2023 +0100 remove phsp-header commit 091f78b Author: Niklas Wahl <[email protected]> Date: Mon Feb 27 12:13:17 2023 +0100 fixes wrong detection of constraint bounds and jacobian structure when respective volume has 0 or only 1 voxel. commit 2ff9f09 Merge: 27ad9ff aab03e9 Author: Niklas Wahl <[email protected]> Date: Fri Feb 24 15:16:09 2023 +0100 Merge pull request e0404#599 from JenHardt/dev BUG: ssd calculation should use actual ray distance instead of SAD commit aab03e9 Merge: 9f4af93 27ad9ff Author: Hardt <[email protected]> Date: Tue Feb 7 15:47:12 2023 +0100 Merge branch 'dev' of https://github.com/JenHardt/matRad into dev commit 9f4af93 Author: Hardt <[email protected]> Date: Tue Feb 7 15:46:27 2023 +0100 small Bugfix commit 5084863 Author: Amit Bennan <[email protected]> Date: Fri Jan 27 10:32:23 2023 +0100 Code style comments addressed (MB review) commit b85ec2c Author: Niklas Wahl <[email protected]> Date: Wed Jan 25 23:04:36 2023 +0100 Downwards compatibility of biological model commit 5663803 Author: Niklas Wahl <[email protected]> Date: Wed Jan 25 18:11:35 2023 +0100 fix missing extractBetween function in Octave commit 64ce14c Merge: d3625aa 4e87571 Author: Niklas Wahl <[email protected]> Date: Tue Jan 24 15:55:11 2023 +0100 Merge pull request e0404#536 from HomolkaN/dev_varRBErobOpt_Update Extensive TOPAS workflow update: commit 260bd66 Merge: a1c8743 ecc6e0c Author: Amit Bennan <[email protected]> Date: Fri Jan 20 14:03:37 2023 +0100 Merge branch 'dev_classGUI_a' of https://github.com/amitantony/matRad into dev_classGUI commit d3625aa Author: Niklas Wahl <[email protected]> Date: Thu Jan 19 13:41:47 2023 +0100 Remove opengl software rendering query due to deprecation commit 3e427cf Author: Niklas Wahl <[email protected]> Date: Thu Jan 19 01:44:05 2023 +0100 Avoid erroring on opengl in matRadGUI commit ecc6e0c Merge: 8c9f8ee 671baea Author: Amit Bennan <[email protected]> Date: Wed Jan 4 13:03:51 2023 +0100 Merge branch 'dev_classGUI' into dev_classGUI_a commit 894211d Author: Niklas Wahl <[email protected]> Date: Wed Dec 21 18:34:02 2022 +0100 improve dicom import handling for RTPlan and RTDose commit 671baea Merge: 91cbc12 27ad9ff Author: Amit Bennan <[email protected]> Date: Tue Dec 20 13:31:01 2022 +0100 Merge branch 'dev' of https://github.com/e0404/matRad into dev_classGUI for Merge experiment commit 27ad9ff Merge: 3b781b6 cb6b04a Author: Niklas Wahl <[email protected]> Date: Tue Nov 29 20:29:38 2022 +0100 Merge branch 'master' into dev commit 8c9f8ee Author: amitantony <[email protected]> Date: Thu Nov 10 14:51:40 2022 +0100 documentation commit c711bdc Author: amitantony <[email protected]> Date: Fri Nov 4 19:19:26 2022 +0100 first working prototype commit 3fe5660 Author: amitantony <[email protected]> Date: Thu Oct 27 11:39:54 2022 +0200 Gamma Widget skeleton commit a1c8743 Author: Amit Bennan <[email protected]> Date: Thu Oct 27 11:38:59 2022 +0200 DVHStatswidget object stored in main gui commit 2d41f12 Author: Amit Bennan <[email protected]> Date: Mon Oct 24 13:36:12 2022 +0200 1. Documentation for newer widget functions 2. clean up of code 3. fully update DVH solution commit 3b781b6 Author: Niklas Wahl <[email protected]> Date: Thu Oct 20 00:01:08 2022 +0200 Update matRad_calcCubes.m Correct MU vector calculation commit 6db771e Merge: fea82a8 1b13404 Author: Niklas Wahl <[email protected]> Date: Wed Oct 5 17:04:51 2022 +0200 Merge branch 'master' into dev commit b80323c Merge: e4ad063 d8c58e0 Author: Amit Bennan <[email protected]> Date: Fri Jul 29 16:06:11 2022 +0200 Merge branch 'dev_classGUI_a' of https://github.com/amitantony/matRad into dev_classGUI_a commit e4ad063 Merge: a216bd1 c0a9f08 Author: Amit Bennan <[email protected]> Date: Fri Jul 29 16:05:59 2022 +0200 Merge branch 'dev_clean' into dev_classGUI_a : runs basic examples commit d8c58e0 Author: amitantony <[email protected]> Date: Fri Jul 29 14:26:47 2022 +0200 [bugfix] errors while running the basic matrad script commit a216bd1 Author: Amit Bennan <[email protected]> Date: Fri Jul 29 10:17:00 2022 +0200 [bug fix] DVH updates with the selected cube for display commit 657ef2b Merge: 13d35e0 d17ecb2 Author: amitLT <[email protected]> Date: Thu Jun 9 14:09:42 2022 +0200 Merge branch 'dev_classGUI_a' of https://github.com/amitantony/matRad into dev_classGUI_a commit d17ecb2 Author: amitantony <[email protected]> Date: Fri Apr 29 17:40:54 2022 +0200 Input Parser for DVH and statistics widget commit eae4a47 Author: amitantony <[email protected]> Date: Wed Apr 27 11:59:30 2022 +0200 bug fix : iso line update problem for "Saved Results" of ResultGUI in viewing widget commit 13d35e0 Author: amitLT <[email protected]> Date: Fri Apr 22 17:07:26 2022 +0200 encoding to UTF8 commit baa9182 Author: amitLT <[email protected]> Date: Thu Apr 21 13:02:15 2022 +0200 bug fix : enabling and disabling sequencing options commit 7204af4 Author: amitLT <[email protected]> Date: Mon Apr 4 18:05:02 2022 +0200 Added sequencing drop down menu to the GUI commit 16beca5 Author: amitLT <[email protected]> Date: Tue Mar 29 14:23:18 2022 +0200 update of new referencing to sequencing in matRad and example scripts commit 5f4da57 Author: amitLT <[email protected]> Date: Tue Mar 29 14:06:10 2022 +0200 Sequencing wrapper function that accepts highlevel matRad structures commit cb5a94c Author: amitLT <[email protected]> Date: Thu Mar 24 09:43:13 2022 +0100 Fixes for couch angle update, (cst,ct ) loaded message, CBTplanning commit 91cbc12 Author: Niklas Wahl <[email protected]> Date: Fri Dec 10 16:15:17 2021 +0100 some fixes in the class-based GUI commit b3cd841 Merge: 5137fcc f725b01 Author: Niklas Wahl <[email protected]> Date: Mon Feb 8 15:01:31 2021 +0100 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit f725b01 Merge: 6b50cf5 51f8428 Author: Niklas Wahl <[email protected]> Date: Mon Feb 8 14:34:26 2021 +0100 Merge pull request e0404#486 from palkma/dev_classGUI added tooltips to GUI elements commit 51f8428 Author: Palkowitsch <[email protected]> Date: Tue Feb 2 16:19:11 2021 +0100 added tooltips commit 5137fcc Merge: 1996919 d930c3e Author: Niklas Wahl <[email protected]> Date: Thu Dec 24 13:39:51 2020 +0100 Merge remote-tracking branch 'origin/master' into dev_classGUI # Conflicts: # MatRad_Config.m # dicom/@matRad_DicomExporter/matRad_DicomExporter.m # dicom/matRad_scanDicomImportFolder.m # matRadGUI.m # matRad_showDVH.m # plotting/matRad_plotIsoDoseLines.m commit 1996919 Merge: 6b50cf5 4399711 Author: Niklas Wahl <[email protected]> Date: Mon Oct 5 11:17:34 2020 +0200 Merge branch 'dev_classGUI' of https://github.com/nellyabbani/matRad into dev_classGUI commit 4399711 Author: nelly.abbani <[email protected]> Date: Fri Aug 28 10:40:18 2020 +0200 uiwrapper function commit 6b50cf5 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 17:02:38 2020 +0200 fix tests commit 434422d Merge: b4c7783 1463811 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 16:26:46 2020 +0200 Merge branch 'dev' of https://github.com/e0404/matRad into dev_classGUI commit b4c7783 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 16:26:10 2020 +0200 changes to gui calls commit 38c7131 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 15:46:46 2020 +0200 more old files removal commit b5d48cf Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 15:44:51 2020 +0200 removal of old logo files commit 736b2f2 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 15:43:39 2020 +0200 gui fixes and removal of old files commit a3ba0c2 Author: Niklas Wahl <[email protected]> Date: Thu Aug 20 18:38:18 2020 +0200 More consistency and compatability updates commit dfd8e9a Author: Niklas Wahl <[email protected]> Date: Wed Aug 19 18:43:47 2020 +0200 modifications to Widget structure and layout, consistent colors, etc commit adac165 Author: Niklas Wahl <[email protected]> Date: Wed Aug 19 10:26:50 2020 +0200 tweaks to the gui widgets, new EventData-based class to explicitly state changed workspace variables commit 6e19dfa Author: Niklas Wahl <[email protected]> Date: Wed Aug 19 10:25:09 2020 +0200 crop logo a little commit 15e4cd8 Author: Niklas Wahl <[email protected]> Date: Wed Aug 19 10:24:37 2020 +0200 remove some old gui functions commit 9bf703f Author: Niklas Wahl <[email protected]> Date: Fri Aug 7 12:12:58 2020 +0200 Move matRadGUI to main folder again commit f271346 Author: Niklas Wahl <[email protected]> Date: Fri Aug 7 12:12:21 2020 +0200 fix createLayout for dicom import commit 52e8fe2 Author: Niklas Wahl <[email protected]> Date: Thu Jul 30 14:21:50 2020 +0200 Fix paths and maximize matRadGUI commit d0885c4 Merge: 36a149d ca4044b Author: Niklas Wahl <[email protected]> Date: Thu Jul 30 11:59:33 2020 +0200 Merge branch 'dev_classGUI' of https://github.com/nellyabbani/matRad into dev_classGUI # Conflicts: # gui/matRadGUI.m commit ca4044b Author: nellyabbani <[email protected]> Date: Wed Jul 29 20:33:14 2020 +0200 Split DVH widget into 2 widgets. Add exportDicom widget. +other small fixes commit 36a149d Author: Niklas Wahl <[email protected]> Date: Wed Jul 29 17:44:10 2020 +0200 changes to avoid crash in Octave commit 5694ffd Author: nellyabbani <[email protected]> Date: Tue Jun 30 10:31:45 2020 +0200 Further improvements to the GUI widgets commit 4f69fa4 Author: nellyabbani <[email protected]> Date: Mon Jun 15 13:11:40 2020 +0200 Small fixes on the GUI widgets commit fe2abdc Author: nellyabbani <[email protected]> Date: Fri Jun 12 17:15:08 2020 +0200 Merge dev_classGUI with master class commit a89edfe Merge: 5620dbe c22da7d Author: nellyabbani <[email protected]> Date: Fri Jun 12 15:59:35 2020 +0200 Merge branch 'master' into dev_classGUI # Conflicts: # dicom/@matRad_importDicomWidget/createLayout.m # dicom/@matRad_importDicomWidget/matRad_importDicomWidget.m # dicom/DKFZ_Logo.png # dicom/gui/matRad_importDicomGUI_LayoutFcn.m # dicom/gui/matRad_importDicomGUI_gui_mainFcn.m # dicom/matRad_checkEnvDicomRequirements.m # dicom/matRad_createCst.m # dicom/matRad_importDicomGUI.fig.bak # dicom/matrad_logo.png # dicomImport/DKFZ_Logo.png # dicomImport/matrad_logo.png # gfx/DKFZ_Logo.png # gfx/matrad_logo.png # matRadGUI.m # matRad_fluenceOptimization.m # matRad_showQualityIndicators.m commit 5620dbe Author: nellyabbani <[email protected]> Date: Fri Jun 12 13:54:32 2020 +0200 Update to refresh the GUI widgets when clicked + implementation of notify and listeners concepts in octave commit 71e397e Author: nellyabbani <[email protected]> Date: Mon Jun 8 09:27:35 2020 +0200 Functioning version of all the GUI widgets commit 4abd14e Author: nellyabbani <[email protected]> Date: Fri May 1 13:06:35 2020 +0200 Scripted GUI widgets commit 3501e99 Author: nellyabbani <[email protected]> Date: Thu Apr 2 18:03:56 2020 +0200 Scripted GUI workflow, plan, and optimization widgets commit 986dbb6 Merge: 4045a4b 833e582 Author: nellyabbani <[email protected]> Date: Tue Mar 3 16:18:17 2020 +0100 Merge remote-tracking branch 'origin/dev_classGUI' into dev_classGUI # Conflicts: # gui/matRad_PlanWidget.m # gui/matRad_WorkflowWidget.m commit 4045a4b Author: nellyabbani <[email protected]> Date: Tue Mar 3 16:13:38 2020 +0100 Initial fix to the widgets commit 833e582 Author: Nabe Al Hasnawi <[email protected]> Date: Fri Feb 28 13:43:55 2020 +0100 Widget Default Values and Names commit 0db80e1 Author: Nabe Al Hasnawi <[email protected]> Date: Tue Feb 25 12:07:10 2020 +0100 matRad gui icons as mat file commit 922c349 Author: Nabe Al Hasnawi <[email protected]> Date: Tue Feb 25 12:04:09 2020 +0100 First developments on independent GUI widgets commit b926ed9 Author: Nabe <[email protected]> Date: Tue Dec 10 11:27:12 2019 +0100 Class based Widgets for import & export with shared import/export GUI commit f55a46a Merge: 6df1b0f d66cf32 Author: Niklas Wahl <[email protected]> Date: Fri Aug 16 16:13:11 2019 +0200 Merge branch 'dev' of https://github.com/wahln/matRad into dev_newScriptedGUI commit 6df1b0f Author: Niklas Wahl <[email protected]> Date: Fri Aug 16 16:12:22 2019 +0200 Exported the IO gui's and added the dicom external GUI files commit b07c70c Author: Niklas Wahl <[email protected]> Date: Tue Aug 13 12:42:03 2019 +0200 fix for missing mat File containing GUI parmeters (is exported from guide). commit 1ae350a Merge: 7ee4580 81e4545 Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 20:13:02 2019 +0200 Merge branch 'dev' of https://github.com/e0404/matRad into dev_newScriptedGUI commit 7ee4580 Merge: ecbcbc1 81332ae Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 20:09:15 2019 +0200 Merge branch 'dev_newScriptedGUI' of https://github.com/wahln/matRad into dev_newScriptedGUI # Conflicts: # matRadGUI_export.m # tools/matRad_fixExportedGUI.m commit 81332ae Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 19:00:03 2019 +0200 new figure files and backup commit e8da6d6 Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 18:56:34 2019 +0200 fix for the dicom import commit 78fd927 Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 18:38:16 2019 +0200 changes to the GUI so that exported main and layout fcn are used commit fa937ee Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 14:04:03 2019 +0200 improves matRadGUI compability and fixes display of the new obejctive table commit df2ca61 Author: Niklas Wahl <[email protected]> Date: Thu Aug 8 12:10:56 2019 +0200 octave compatible dicom import commit ecbcbc1 Author: Niklas Wahl <[email protected]> Date: Wed Jun 12 23:28:26 2019 +0200 fides to the exported GUI commit 65a91ca Author: Niklas Wahl <[email protected]> Date: Tue Jun 4 12:50:54 2019 +0200 script to remove unnecessary options for graphics options commit 2d7b739 Author: Niklas Wahl <[email protected]> Date: Fri May 24 21:08:39 2019 +0200 initial export with line fix
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note: does not include robust optimization interface