Adapt dose engine concept to dev_varRBErobOpt #683
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First (real) commit into the refactorDoseCalc branch. Includes all up till now created dose calc engines for the refactoring of the dose calculation in MatRad. The goal of this refactoring is, to leave the full script-file based dose calculation (which is used right now) and use a modular class based dose calculation. This should provide a modifiable and modular engine class for each major calculation method. Those engines can then be expanded and specified by inheritance. This solution should also add a factory like overview, over possible engines for a given treatment planning.
Merge new master changes into dev_refactorDoseCalc
matRad_calcDose funktion should supersede the funktion of the other matRad_... calc funktions by creating the fitting engine and call the dose calc method.
Removed the content of deprecated functions and replaced their content with the creation and call of a fitting doseCalcEngine. The functions can still be called exactly like before in order to assure downwards compatibility.
…on or are now implemented inside the engines
Merge e0404/master branch into dev_refactorDoseCalc
# Conflicts: # AUTHORS.txt # MatRad_Config.m # matRad_calcDoseInit.m # matRad_calcPhotonDose.m
# Conflicts: # matRad_calcPhotonDose.m
Forgot to turn off the visualization for the lateral cut off inside the physical dose calculation, which resulted in an octave error
# Conflicts: # matRad_calcParticleDose.m
# Conflicts: # matRad_calcParticleDose.m
# Conflicts: # matRad_calcParticleDose.m
# Conflicts: # matRad_calcParticleDose.m
Implementation of the analytical dose engine
# Conflicts: # doseCalc/+DoseEngines/matRad_DoseEngineParticlePB.m
Incorperate multiple weighted lateral Gaussian Profiles
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This draft PR adapts the dose engine concept to the dev_varRBErobOpt branch. Since the dose engine concept is currently residing on the dev branch, this PR prepares the union of dev and dev_varRBErobOpt.
Some adaptations are still to be done (mostly with regards to biological model management and maybe scenario management - now would be the time to change it).
I will assign a few reviewers to do a first rough validation of this refactoring.