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Cutoff method #780

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wants to merge 1,848 commits into from
Closed

Cutoff method #780

wants to merge 1,848 commits into from

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SimonaFa
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Bug fixing

wahln and others added 30 commits July 23, 2024 18:37
@wahln
fixes for standalone compilation
767b353
@wahln
Update AUTHORS.txt
bfe41ad 
Add Remo
@wahln
Small quality of life fixes in GUI usage (avoid consistency warnings …
1b27881 
…when plan is changed, choose correct biological model)
@wahln
fix and test suite for comparePlnStf function
1a40821
@wahln
test for dij / stf comparison
eb525e1
@amitantony
addressing rcomments from the PR review
ba896c1
@wahln
Separate top-level tools folder for functions not relevant to the mai…
9bb84f7 
…n code, merge matRad/tools and matRad/util
@JenHardt
small bug fix, that happens if there is more than one beam
7059198
@JenHardt
script and files to create small ct,stf, files for fast testing of do…
760a7a8 
…se calculation
@JenHardt
Create test_TopasMCEngine.m
33c2101 
test of TOPAS engine, including if the machines are loaded correctly, and if the correct output files are written, for 1 and 5 batches
@amitantony
consistent tranformation to the image coordinate system (isocenter at…
4ca3591 
… 0,0 )
@amitantony
renaming it to world2isocentricCoords
483f8d1
@wahln
unit fix due to bug in lateral cutoff for bortfeld engine
06b6217
@wahln
adjust formatting of 3D widget
6c84b5c
@wahln
Some fixes in the TOPAS engine and tests for Octave 6
0800a0d
@wahln
add the testData folder in runTests
a7d2b8c
@wahln
Octave compatibility in TOPAS Engine
a945b58
@wahln
dose engine no longer warns for classdef conversion in Ocave 6
5cfe926
@wahln
cleanup of topas engine test
6b9e168
@wahln
Merge pull request e0404#752 from JenHardt/dev
da6af4f 
Updates to Test
@SimonaFa
First draft for testing Analytical dose engine
6c6ad09
@wahln
Fixes for GUI and plot functions
5b040d9
@wahln
Merge branch 'dev' of github.com:e0404/matRad into dev
8e4bb37
@wahln
Octave compatibility functions for property queries
1e6e76b
@wahln
Merge branch 'dev' into feature/doseWeightingThreshold
dc69f1c 
# Conflicts:
#	matRad/util/matRad_calcCubes.m
@wahln
changes to topas csv read
a2067e5
@wahln
fix quantity display and speed in ViewingWidget
1d1bc87
@wahln
Extend binary patient import for better structure assignment
ab5a10a
@wahln
fix nifti import/export orientation
6a73e49
@wahln
add external contour type to optimization widget
7a95346
amitantony and others added 29 commits October 8, 2024 18:05
@amitantony
Update matRad_scanDicomImportFolder.m
c425155 
questdlg  error for octave
@amitantony
Update matRad_scanDicomImportFolder.m
1705db5
@amitantony
Update matRad_scanDicomImportFolder.m
d56ac92 
replacing rmmissing (not supported on octave)
@wahln
small quality of life changes:
9e8c918 
* make sure rad_depth_cubes are stored
* some numerical stability in the siddon ray tracer
@wahln
respect waitbar settings and loglevels in dicom import
4ecde64
@wahln
fix in DICOM exporter to pass tests
f89d141
@wahln
disable octave asking for deletion of temporary test directory
0d9f177
@wahln
Merge branch 'dev' into refactor/dicomImporter
97fdc68
@wahln
Merge pull request e0404#758 from Raedlr/refactor/dicomImporter
5d6be04 
Refactor dicom importer
@wahln
add two tests for badly covered plotting functions
f872e9f
@wahln
apply correction from dose calcualtion for more accurate WEPL calcula…
e5086cd 
…tion to Stf Generation
@wahln
gcp in try catch block in matRad_sampling
5624fb8
@wahln
extend photons test data with a dij and a resultGUI
cabd8ee
@wahln
fix siochi leaf sequencing
d06b4fc
@wahln
sequencing tests
2eb90a6
@wahln
fix small typo in impt stf
5998f98
@wahln
adapt test data
ac38d23
@wahln
clean test code
ec64bb8
@wahln
clean io tests to use helper function for temporary directory
c0c6028
@wahln
fix empty masks in isosurface when smoothed too much
b5ca585
@wahln
remove deprecated generateStfSinglePencilBeam function
7e64942
@wahln
remove duplicate progress function
f87e333
@amitantony
tests for dose objectives
334a4ca
@amitantony
tests for dose constraints
07cf6d9
@amitantony
file was in the wrong folder
a75ace1
@amitantony
Merge pull request e0404#779 from amitantony/dev_ObjTest
d95d480 
Dev constraints tests
@wahln
test cleanup (NaN instead of nan)
9b2f413
@wahln
avoid use of mean function due to behavior in Octaves nan package.
a1df21c
@SimonaFa
Cutoff method
eba1075 
Bug fixing
@SimonaFa SimonaFa closed this Oct 14, 2024
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7 participants
@SimonaFa @wahln @amitantony @JenHardt @Gattowski @remocristoforetti @Raedlr