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TAT_audit - Handle new DX project naming #34

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rklocke opened this issue Dec 3, 2024 · 0 comments
Open

TAT_audit - Handle new DX project naming #34

rklocke opened this issue Dec 3, 2024 · 0 comments

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@rklocke
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rklocke commented Dec 3, 2024

For implementation of GRCh38, plan to add '_37_{assay}' and '_38_{assay}' to DX sequencing run project names so update to TAT_audit needed to handle this.

Projects are searched for in DNAnexus here using assay suffixes specified in the config so we can change it to specify e.g. ‘38_CEN’ instead of 'CEN': https://github.com/eastgenomics/themis/blob/main/TAT_audit/utils/dx_requests.py#L84
However:

This causes downstream issues below:

Should consider updating to extract the run name using regex

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