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For implementation of GRCh38, plan to add '_37_{assay}' and '_38_{assay}' to DX sequencing run project names so update to TAT_audit needed to handle this.
For implementation of GRCh38, plan to add
'_37_{assay}'
and'_38_{assay}'
to DX sequencing run project names so update to TAT_audit needed to handle this.Projects are searched for in DNAnexus here using assay suffixes specified in the config so we can change it to specify e.g. ‘38_CEN’ instead of 'CEN': https://github.com/eastgenomics/themis/blob/main/TAT_audit/utils/dx_requests.py#L84
However:
‘_37_’
or‘_38_’
): https://github.com/eastgenomics/themis/blob/main/TAT_audit/utils/dx_requests.py#L247This causes downstream issues below:
Should consider updating to extract the run name using regex
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