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@eastgenomics

East Genomics

Bringing together genomic medicine across the East Midlands and East of England

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  1. eggd_tso500 eggd_tso500 Public

    Runs the Illumina TSO500 local analysis app.

    Shell 5 2

  2. eggd_mosdepth eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    Shell 4

  3. athena athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    HTML 4 2

  4. Ploutos Ploutos Public archive

    Code for the DNAnexus billing project.

    Python 4

  5. eggd_staraligner eggd_staraligner Public

    Shell 4

  6. eggd_generate_variant_workbook eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    Python 3

Repositories

Showing 10 of 241 repositories
  • ici_reports_export Public

    This is a script to query ICIs API and get any

    eastgenomics/ici_reports_export’s past year of commit activity
    0 MIT 0 0 1 Updated Jan 31, 2025
  • eggd_conductor_configs Public

    Repository of eggd_conductor app and assay config files

    eastgenomics/eggd_conductor_configs’s past year of commit activity
    0 0 2 1 Updated Jan 30, 2025
  • eggd_vep_CENCNV_config Public

    Json configuration file for CEN CNV annotation using VEP.

    eastgenomics/eggd_vep_CENCNV_config’s past year of commit activity
    0 MIT 0 1 1 Updated Jan 30, 2025
  • eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    eastgenomics/eggd_generate_variant_workbook’s past year of commit activity
    Python 3 0 12 0 Updated Jan 30, 2025
  • eggd_dias_reports_workflow Public

    Workflow definition for Dias reports

    eastgenomics/eggd_dias_reports_workflow’s past year of commit activity
    1 0 1 0 Updated Jan 30, 2025
  • eggd_plot_variant_baf Public

    Plots BAF and depth of variants from given VCF

    eastgenomics/eggd_plot_variant_baf’s past year of commit activity
    R 0 MIT 0 4 0 Updated Jan 29, 2025
  • eggd_vep_CEN_config Public

    Json configuration file for the implementation of VEP for the CEN assay.

    eastgenomics/eggd_vep_CEN_config’s past year of commit activity
    1 MIT 0 1 0 Updated Jan 29, 2025
  • dx_job_monitor Public

    Check if the 002 jobs completed correctly and sends notifications

    eastgenomics/dx_job_monitor’s past year of commit activity
    Python 1 0 0 0 Updated Jan 29, 2025
  • eggd_vep Public
    eastgenomics/eggd_vep’s past year of commit activity
    Shell 1 0 9 0 Updated Jan 29, 2025
  • eggd_vep_TWE_config Public

    Json configuration file for the implementation of VEP for the TWE assay.

    eastgenomics/eggd_vep_TWE_config’s past year of commit activity
    1 MIT 0 1 0 Updated Jan 29, 2025
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