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Merge pull request #19463 from easybuilders/4.9.x
release EasyBuild v4.9.0
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,30 @@ | ||
| easyblock = 'ConfigureMake' | ||
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| name = '4ti2' | ||
| version = '1.6.9' | ||
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| homepage = 'https://4ti2.github.io/' | ||
| description = """A software package for algebraic, geometric and combinatorial problems on linear spaces""" | ||
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| toolchain = {'name': 'GCC', 'version': '11.3.0'} | ||
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| github_account = '4ti2' | ||
| source_urls = [GITHUB_SOURCE] | ||
| sources = ['Release_%s.tar.gz' % '_'.join(version.split('.'))] | ||
| checksums = ['7b1015718102d8cd4dc2de64f69094fdba0bc69a1878ada5960979b171ff89e4'] | ||
|
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| dependencies = [ | ||
| ('GMP', '6.2.1'), | ||
| ('GLPK', '5.0'), | ||
| ] | ||
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| builddependencies = [('Autotools', '20220317')] | ||
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| preconfigopts = './autogen.sh && ' | ||
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| sanity_check_paths = { | ||
| 'files': ['bin/%s' % x for x in ['4ti2gmp', '4ti2int32', '4ti2int64']], | ||
| 'dirs': ['include/4ti2', 'lib', 'share/4ti2'] | ||
| } | ||
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| moduleclass = 'math' |
64 changes: 64 additions & 0 deletions
64
easybuild/easyconfigs/a/AICSImageIO/AICSImageIO-4.14.0-foss-2022a.eb
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,64 @@ | ||
| easyblock = 'PythonBundle' | ||
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| name = 'AICSImageIO' | ||
| version = '4.14.0' | ||
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| homepage = 'https://github.com/AllenCellModeling/aicsimageio' | ||
| description = """Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Pure Python""" | ||
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| toolchain = {'name': 'foss', 'version': '2022a'} | ||
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| dependencies = [ | ||
| ('Python', '3.10.4'), | ||
| ('dask', '2022.10.0'), | ||
| ('imagecodecs', '2022.9.26'), | ||
| ('lxml', '4.9.1'), | ||
| ('SciPy-bundle', '2022.05'), | ||
| ('PyYAML', '6.0'), | ||
| ('wrapt', '1.15.0'), | ||
| ('xarray', '2022.6.0'), | ||
| ('zarr', '2.13.3'), | ||
| ('aiohttp', '3.8.3'), | ||
| ('scikit-image', '0.19.3'), | ||
| ('pydantic', '1.10.4'), | ||
| ] | ||
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| sanity_pip_check = True | ||
| use_pip = True | ||
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| exts_list = [ | ||
| ('pydantic_compat', '0.1.2', { | ||
| 'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl', | ||
| 'checksums': ['37a4df48565a35aedc947f0fde5edbdff270a30836d995923287292bb59d5677'], | ||
| }), | ||
| ('xsdata', '23.8', { | ||
| 'checksums': ['55f03d4c88236f047266affe550ba0dd19476adfce6a01f3e0aefac7c8078e56'], | ||
| }), | ||
| ('ome_types', '0.4.3', { | ||
| 'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl', | ||
| 'checksums': ['3d97ce595d0f2f9c37dce3dd359fb30c7dbcad8c8c806604c40f18f99be8c1b2'], | ||
| }), | ||
| # Overwrites installed version because aicsimageio 4.14.0 has requirement fsspec<2023.9.0,>=2022.8.0 | ||
| ('fsspec', '2023.6.0', { | ||
| 'checksums': ['d0b2f935446169753e7a5c5c55681c54ea91996cc67be93c39a154fb3a2742af'], | ||
| }), | ||
| ('ome-zarr', '0.8.3', { | ||
| 'checksums': ['e98762e6a3cc82e8f6ef50c938e23fc579498d94d1991f3476ccf9726209997b'], | ||
| }), | ||
| ('resource_backed_dask_array', '0.1.0', { | ||
| 'checksums': ['8fabcccf5c7e29059b5badd6786dd7675a258a203c58babf10077d9c90ada54f'], | ||
| }), | ||
| ('elementpath', '4.1.5', { | ||
| 'checksums': ['c2d6dc524b29ef751ecfc416b0627668119d8812441c555d7471da41d4bacb8d'], | ||
| }), | ||
| ('xmlschema', '2.5.0', { | ||
| 'checksums': ['276a03e0fd3c94c148d528bff4d9482f9b99bf8c7b4056a2e8e703d28149d454'], | ||
| }), | ||
| ('%(namelower)s', version, { | ||
| 'checksums': ['0f6684587b1d833ce5b10f3e81314e2a89269cd94bd09747fcd6460f3119855c'], | ||
| }), | ||
| ] | ||
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| sanity_check_commands = ["python -c 'from aicsimageio.writers import OmeTiffWriter'"] | ||
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| moduleclass = 'lib' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,41 @@ | ||
| easyblock = 'CMakeMake' | ||
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| name = 'ALL' | ||
| version = '0.9.2' | ||
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| homepage = 'https://gitlab.jsc.fz-juelich.de/SLMS/loadbalancing' | ||
| description = """A Load Balancing Library (ALL) aims to provide an easy way to include dynamic | ||
| domain-based load balancing into particle based simulation codes. The library | ||
| is developed in the Simulation Laboratory Molecular Systems of the Jülich | ||
| Supercomputing Centre at Forschungszentrum Jülich.""" | ||
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| toolchain = {'name': 'foss', 'version': '2023a'} | ||
| toolchainopts = {'usempi': True} | ||
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| source_urls = ["https://gitlab.jsc.fz-juelich.de/SLMS/loadbalancing/-/archive/v%(version)s/"] | ||
| sources = ['loadbalancing-v%(version)s.tar.gz'] | ||
| checksums = ['2b4ef52c604c3c0c467712d0912a33c82177610b67edc14df1e034779c6ddb71'] | ||
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| builddependencies = [ | ||
| ('CMake', '3.26.3'), | ||
| ('Boost', '1.82.0'), # only needed for tests | ||
| ] | ||
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| dependencies = [ | ||
| ('VTK', '9.3.0'), | ||
| ] | ||
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| configopts = '-DCM_ALL_FORTRAN=ON -DCM_ALL_USE_F08=ON -DCM_ALL_VORONOI=ON -DCM_ALL_VTK_OUTPUT=ON ' | ||
| configopts += '-DCM_ALL_TESTS=ON -DCM_ALL_AUTO_DOC=OFF -DVTK_DIR=$EBROOTVTK ' | ||
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| runtest = 'test' | ||
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| sanity_check_paths = { | ||
| 'files': [ | ||
| 'include/ALL.hpp', 'include/ALL_Voronoi.hpp', 'lib/all_module.mod', | ||
| 'lib/libALL.a', 'lib/libALL_fortran.a' | ||
| ], | ||
| 'dirs': ['lib/cmake'], | ||
| } | ||
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| moduleclass = 'lib' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,29 @@ | ||
| easyblock = 'ConfigureMake' | ||
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| name = 'ANTIC' | ||
| version = '0.2.5' | ||
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| homepage = 'https://github.com/flintlib/antic' | ||
| description = "Antic is an algebraic number theory library." | ||
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| toolchain = {'name': 'gfbf', 'version': '2022a'} | ||
| toolchainopts = {'pic': True} | ||
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| github_account = 'flintlib' | ||
| source_urls = [GITHUB_SOURCE] | ||
| sources = ['v%(version)s.tar.gz'] | ||
| checksums = ['7b236b6226d5730cf66d492f1562c34d4dcf1bdc8775fec2330f560332ab05c1'] | ||
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| dependencies = [('FLINT', '2.9.0')] | ||
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| configopts = "--with-gmp=$EBROOTGMP --with-mpfr=$EBROOTMPFR --with-flint=$EBROOTFLINT " | ||
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| runtest = 'check' | ||
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| sanity_check_paths = { | ||
| 'files': ['lib/libantic.%s' % e for e in ['a', SHLIB_EXT]] + | ||
| ['include/antic/%s.h' % h for h in ['nf', 'nf_elem', 'qfb']], | ||
| 'dirs': [], | ||
| } | ||
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| moduleclass = 'math' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,37 @@ | ||
| easyblock = 'CMakeMake' | ||
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| name = 'ANTs' | ||
| version = '2.5.0' | ||
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| homepage = 'https://stnava.github.io/ANTs/' | ||
| description = """ANTs extracts information from complex datasets that include imaging. ANTs is useful for managing, | ||
| interpreting and visualizing multidimensional data.""" | ||
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| toolchain = {'name': 'foss', 'version': '2022b'} | ||
| toolchainopts = {'pic': True} | ||
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| source_urls = ['https://github.com/ANTsX/ANTs/archive/'] | ||
| sources = ['v%(version)s.tar.gz'] | ||
| checksums = ['326efda09608a19752e802acc46ed808a4fdb62765f11a4f26402a5aa8bc70ac'] | ||
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| builddependencies = [('CMake', '3.24.3')] | ||
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| dependencies = [ | ||
| ('Python', '3.10.8'), | ||
| ('VTK', '9.2.6'), | ||
| ] | ||
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| configopts = '-DBUILD_SHARED_LIBS=ON -DBUILD_TESTING=OFF ' | ||
| configopts += '-DUSE_VTK=ON -DUSE_SYSTEM_VTK=ON ' | ||
| configopts += '-DSuperBuild_ANTS_USE_GIT_PROTOCOL=OFF' | ||
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| preinstallopts = "cd ANTS-build && " | ||
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| sanity_check_paths = { | ||
| 'files': ['bin/ANTS', 'bin/antsBrainExtraction.sh'], | ||
| 'dirs': ['lib'], | ||
| } | ||
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| modextravars = {'ANTSPATH': '%(installdir)s/bin'} | ||
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| moduleclass = 'data' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,39 @@ | ||
| easyblock = 'MesonNinja' | ||
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| name = 'ATK' | ||
| version = '2.38.0' | ||
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| homepage = 'https://developer.gnome.org/atk/' | ||
| description = """ | ||
| ATK provides the set of accessibility interfaces that are implemented by other | ||
| toolkits and applications. Using the ATK interfaces, accessibility tools have | ||
| full access to view and control running applications. | ||
| """ | ||
|
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| toolchain = {'name': 'GCCcore', 'version': '13.2.0'} | ||
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| source_urls = [FTPGNOME_SOURCE] | ||
| sources = [SOURCELOWER_TAR_XZ] | ||
| checksums = ['ac4de2a4ef4bd5665052952fe169657e65e895c5057dffb3c2a810f6191a0c36'] | ||
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| builddependencies = [ | ||
| ('binutils', '2.40'), | ||
| ('Meson', '1.2.3'), | ||
| ('Ninja', '1.11.1'), | ||
| ('pkgconf', '2.0.3'), | ||
| ('GObject-Introspection', '1.78.1'), | ||
| ] | ||
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| dependencies = [ | ||
| ('GLib', '2.78.1'), | ||
| ] | ||
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| configopts = "--buildtype=release --default-library=both " | ||
| configopts += "-Dintrospection=true " | ||
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| sanity_check_paths = { | ||
| 'files': ['lib/libatk-1.0.%s' % SHLIB_EXT], | ||
| 'dirs': [], | ||
| } | ||
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| moduleclass = 'vis' |
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