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68 Open 6 Closed
68 Open 6 Closed
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Issues list

Create FDPs for Hamlet data as 'LUMC' and Phenopacket store as 'Sweden' eg on test bed
#75 opened Jul 29, 2024 by mroos
@markwilkinson @NuriaQueralt
@rosazwart @Acb897
Convert Rosa's query into Shallot calls
#74 opened Jul 29, 2024 by mroos
@markwilkinson @NuriaQueralt
@rosazwart @Acb897
Play with Mark's Virtual Platform
#73 opened Jul 22, 2024 by mroos
@markwilkinson
1
Describe in slides to explain connection in metadata between station data service and train metadata
#72 opened Apr 29, 2024 by mroos
3 tasks
@luizbonino @dwijnbergen
Create mock FDPs in Test bed with Clinical Genetics catalogue entries for mock LUMC, RUMC, HCP-X
#71 opened Apr 22, 2024 by mroos
3 tasks
@andrawaag @NuriaQueralt
2
Create mock RDF of clinical information (diagnosis, diagnostic test, symptom=phenotype) conform to CARE SM CDEs in Test bed for the genome interoperability use case for mock LUMC, RUMC, HCP-X
#70 opened Apr 22, 2024 by mroos
@andrawaag @NuriaQueralt
Create mock RDF of pathogenic variants conform to CARE SM version of Phenopacket Genotype in Test bed for the genome interoperability use case for mock LUMC, RUMC, HCP-X
#69 opened Apr 22, 2024 by mroos
@andrawaag @NuriaQueralt
Create mock ontologised data (RDF) in Test bed for the genome interoperability use case
#68 opened Apr 22, 2024 by mroos
3 tasks
@andrawaag @NuriaQueralt
Define common methods used in use cases
#66 opened Apr 15, 2024 by dwijnbergen
@markwilkinson @wna-se
@mroos @luizbonino @dwijnbergen
See how to integrate predictions of marketed drugs with other use cases.
#65 opened Apr 15, 2024 by dwijnbergen
@andrawaag @mroos
@NuriaQueralt @dwijnbergen
1
Definitions federated analysis and distributed analysis
#64 opened Apr 15, 2024 by dwijnbergen
@mroos @hbcesar
@luizbonino @dwijnbergen
1
Define how DCAT interacts with Semantic Phenopackets Model
#38 opened Apr 7, 2024 by mroos
Define how DCAT interacts with Semantic Phenopackets Model
#37 opened Apr 7, 2024 by mroos
@NuriaQueralt @dwijnbergen
1
Create writable FDPs for BioHackathon
#36 opened Feb 12, 2024 by mroos
1
Create L3 slide decks use case This is a use case
#41 opened Feb 12, 2024 by mroos
10 tasks
@mroos @hbcesar @luizbonino
1
Add Care-SM synthetic data source to test bed
#35 opened Jan 29, 2024 by mroos
@pabloalarconm @Acb897
1
Scenario of the tutorial (steps etc.)
#34 opened Jan 29, 2024 by mroos
@mroos @hbcesar
@luizbonino @pabloalarconm @brunasv @Acb897
1
Sort out github distributedanalysis fs federated
#33 opened Jan 29, 2024 by mroos
@dwijnbergen
Make inventory of necessary services for test bed and VP tutorial
#32 opened Jan 29, 2024 by mroos
@kburger @Acb897
1
Share configuration of test bed so people can add or link components to it.
#30 opened Jan 29, 2024 by mroos
@kburger @luizbonino @Acb897
7
Synthetic genome data and 1+ Million Genomes Framework services (NBIS - ELIXIR Sweden) use case step This is a step of a use case
#29 opened Jan 29, 2024 by mroos
@wna-se
14
Define specific queries on specific CDEs modelled by Care-SM
#28 opened Jan 15, 2024 by mroos
2 tasks
@ericprud @andrawaag
@markwilkinson @mroos @NuriaQueralt
13
Discuss the metadata required for a Data Service.
#42 opened Jan 8, 2024 by markwilkinson
FDP oversight and admin rights contact point
#43 opened Dec 4, 2023 by andrawaag
Step 14 - Use the FAIR Train Handler to send the Trains to the stations planning step step in the planning of the FAIR Data Train
#27 opened Dec 4, 2023 by mroos
ProTip! Adding no:label will show everything without a label.