remove ContentDiscovery.

ejp-rd-vp · Aug 7, 2024 · f57eacf · f57eacf
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commit f57eacf
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diff --git a/ejprd_resource_metadata_ontology.owl b/ejprd_resource_metadata_ontology.owl
@@ -5599,6 +5599,16 @@ A primary source relation is a particular case of derivation of secondary materi
 
 
 
+    <!-- https://w3id.org/ejp-rd/vocabulary#CountingCase -->
+
+    <owl:Class rdf:about="https://w3id.org/ejp-rd/vocabulary#CountingCase">
+        <rdfs:subClassOf rdf:resource="http://edamontology.org/operation_0224"/>
+        <rdfs:comment>A service that executes the EJP-RD &apos;counting case&apos; demonstrator - how many individuals with a specific diagnosis</rdfs:comment>
+        <rdfs:label>CountingCase</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- https://w3id.org/ejp-rd/vocabulary#Guideline -->
 
     <owl:Class rdf:about="https://w3id.org/ejp-rd/vocabulary#Guideline">
@@ -5617,6 +5627,16 @@ A primary source relation is a particular case of derivation of secondary materi
 
 
 
+    <!-- https://w3id.org/ejp-rd/vocabulary#PhenotypeFrequency -->
+
+    <owl:Class rdf:about="https://w3id.org/ejp-rd/vocabulary#PhenotypeFrequency">
+        <rdfs:subClassOf rdf:resource="http://edamontology.org/operation_0224"/>
+        <rdfs:comment>A service that executes the &quot;phenotype frequency&quot; L2 demonstrator - how often does a phenotype or symptom appear in the dataset (on a per-patient basis)</rdfs:comment>
+        <rdfs:label>PhenotypeFrequency</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- https://w3id.org/ejp-rd/vocabulary#VPBeacon2_biosamples -->
 
     <owl:Class rdf:about="https://w3id.org/ejp-rd/vocabulary#VPBeacon2_biosamples">
@@ -5687,16 +5707,6 @@ A primary source relation is a particular case of derivation of secondary materi
 
 
 
-    <!-- https://w3id.org/ejp-rd/vocabulary#VPContentDiscovery -->
-
-    <owl:Class rdf:about="https://w3id.org/ejp-rd/vocabulary#VPContentDiscovery">
-        <rdfs:subClassOf rdf:resource="https://w3id.org/ejp-rd/vocabulary#VPConnection"/>
-        <rdfs:label>VPContentDiscovery</rdfs:label>
-        <owl:deprecated>true</owl:deprecated>
-    </owl:Class>
-
-
-
     <!-- https://w3id.org/ejp-rd/vocabulary#VPDiscoverable -->
 
     <owl:Class rdf:about="https://w3id.org/ejp-rd/vocabulary#VPDiscoverable">

diff --git a/extension/ejprd-schema-template.csv b/extension/ejprd-schema-template.csv
@@ -5,7 +5,6 @@ ejprd:PatientRegistry,Patient registry,,,class,dcat:Resource,,,
 ejprd:Guideline,Guideline,,,class,dcat:Resource,,,
 ejprd:VPConnection,VPConnection,,true,class,duo:DUO_0000017,,,
 ejprd:VPDiscoverable,VPDiscoverable,,true,class,ejprd:VPConnection,,,
-ejprd:VPContentDiscovery,VPContentDiscovery,,true,class,ejprd:VPConnection,,,
 ejprd:VPBeacon2_individuals,VPBeacon2_individuals,The annotated resource (always a DataService) provides the Beacon2 /individuals interface.,,class,edam:operation_2421,,,
 ejprd:VPBeacon2_catalog,VPBeacon2_catalog,The annotated resource (always a DataService) provides the Beacon2 /catalog interface.,,class,edam:operation_2421,,,
 ejprd:VPBeacon2_biosamples,VPBeacon2_biosamples,The annotated resource (always a DataService) provides the Beacon2 /biosamples interface.,,class,edam:operation_2421,,,
@@ -16,3 +15,5 @@ ejprd:personalData,personalData,,owl:DataProperty,,,duo:RO_0000087,dcat:Resource
 ejprd:populationCoverage,populationCoverage,,,owl:DataProperty,,schema:populationType,dcat:Resource,xsd:string
 vcard:hasEmail,hasEmail,,,owl:DataProperty,,,vcard:Kind,xsd:string
 vcard:hasTelephone,hasTelephone,,,owl:DataProperty,,,vcard:Kind,xsd:string
+ejprd:PhenotypeFrequency,PhenotypeFrequency,"A service that executes the ""phenotype frequency"" L2 demonstrator - how often does a phenotype or symptom appear in the dataset (on a per-patient basis)",,class,edam:operation_0224,,,
+ejprd:CountingCase,CountingCase,A service that executes the EJP-RD 'counting case' demonstrator - how many individuals with a specific diagnosis,,class,edam:operation_0224,,,
diff --git a/extension/extension.owl b/extension/extension.owl
@@ -69,6 +69,12 @@
 
 
 
+    <!-- http://edamontology.org/operation_0224 -->
+
+    <owl:Class rdf:about="http://edamontology.org/operation_0224"/>
+
+
+
     <!-- http://edamontology.org/operation_2421 -->
 
     <owl:Class rdf:about="http://edamontology.org/operation_2421"/>
@@ -102,6 +108,16 @@
 
 
 
+    <!-- https://w3id.org/ejp-rd/vocabulary#CountingCase -->
+
+    <owl:Class rdf:about="https://w3id.org/ejp-rd/vocabulary#CountingCase">
+        <rdfs:subClassOf rdf:resource="http://edamontology.org/operation_0224"/>
+        <rdfs:comment>A service that executes the EJP-RD &apos;counting case&apos; demonstrator - how many individuals with a specific diagnosis</rdfs:comment>
+        <rdfs:label>CountingCase</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- https://w3id.org/ejp-rd/vocabulary#Guideline -->
 
     <owl:Class rdf:about="https://w3id.org/ejp-rd/vocabulary#Guideline">
@@ -120,6 +136,16 @@
 
 
 
+    <!-- https://w3id.org/ejp-rd/vocabulary#PhenotypeFrequency -->
+
+    <owl:Class rdf:about="https://w3id.org/ejp-rd/vocabulary#PhenotypeFrequency">
+        <rdfs:subClassOf rdf:resource="http://edamontology.org/operation_0224"/>
+        <rdfs:comment>A service that executes the &quot;phenotype frequency&quot; L2 demonstrator - how often does a phenotype or symptom appear in the dataset (on a per-patient basis)</rdfs:comment>
+        <rdfs:label>PhenotypeFrequency</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- https://w3id.org/ejp-rd/vocabulary#VPBeacon2_biosamples -->
 
     <owl:Class rdf:about="https://w3id.org/ejp-rd/vocabulary#VPBeacon2_biosamples">
@@ -190,16 +216,6 @@
 
 
 
-    <!-- https://w3id.org/ejp-rd/vocabulary#VPContentDiscovery -->
-
-    <owl:Class rdf:about="https://w3id.org/ejp-rd/vocabulary#VPContentDiscovery">
-        <rdfs:subClassOf rdf:resource="https://w3id.org/ejp-rd/vocabulary#VPConnection"/>
-        <rdfs:label>VPContentDiscovery</rdfs:label>
-        <owl:deprecated>true</owl:deprecated>
-    </owl:Class>
-
-
-
     <!-- https://w3id.org/ejp-rd/vocabulary#VPDiscoverable -->
 
     <owl:Class rdf:about="https://w3id.org/ejp-rd/vocabulary#VPDiscoverable">