Release v1.5

.github/ISSUE_TEMPLATE.md

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+**Describe your problem.**
+
+A clear and concise description of what the problem is.
+
+
+**If it is a bug name steps to reproduce**
+
+Steps to reproduce the behavior:
+1. Go to '...'
+2. Click on '....'
+3. Scroll down to '....'
+4. See error
+
+
+**If it is a bug complete the following information:**
+
+- Version: [e.g. 1.2.3]
+- OS: [e.g. Windows, Linux, OS X]
+- Browser: [e.g. chrome, firefox, safari]
+
+
+**Describe the solution you'd like**
+
+A clear and concise description of what you want to happen.
+
+
+**Additional context**
+
+Add any other context or screenshots about the feature request here.

.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,5 @@
+**What's in the PR**
+* ...
+
+**How to test manually**
+* ...

.github/semantic.yml

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+# Always validate the PR title AND all the commits
+titleAndCommits: true
+# Allows use of Merge commits (eg on github: "Merge branch 'master' into feature/ride-unicorns")
+# this is only relevant when using commitsOnly: true (or titleAndCommits: true)
+allowMergeCommits: true

.github/workflows/dev-ci-cd.yml

@@ -0,0 +1,46 @@
+name: DEV-CI-CD
+
+on:
+  push:
+    branches: [ "develop" ]
+
+jobs:
+
+  ci:
+
+    runs-on: ubuntu-latest
+    environment: DEV
+
+    steps:
+    - uses: actions/checkout@v3
+
+    - name: Set up JDK 17
+      uses: actions/setup-java@v2
+      with:
+        java-version: '17'
+        distribution: 'temurin'
+        cache: maven
+
+    - name: Build with Maven
+      run: mvn clean package -Dmaven.source.skip -Dmaven.test.skip=true
+
+    - name: Build the Docker image
+      run: docker build . --file docker/Dockerfile --tag ${{ secrets.DOCKER_IMAGE_TAG }} --no-cache
+
+    - name: Login to Registry
+      run: docker login ${{ secrets.REGISTRY_URL }} -u ${{ secrets.REGISTRY_USERNAME }} -p ${{ secrets.REGISTRY_PASSWORD }}
+
+    - name: Push the latest DEV image
+      run: docker push ${{ secrets.DOCKER_IMAGE_TAG }}
+
+  cd:
+    name: Redeploy - Webhook call
+    runs-on: ubuntu-latest
+    environment: DEV
+    needs: ci
+    steps:
+      - name: Redeploy
+        uses: joelwmale/webhook-action@master
+        with:
+          url: ${{ secrets.WEBHOOK_URL  }}
+          headers: ${{ secrets.WEBHOOK_HEADERS  }}

LICENSE

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README.md

@@ -0,0 +1,60 @@
+# VP-Portal Backend: Federated Discovery and Query Platform for Rare Disease Research
+
+Welcome to the vp-dp-backend GitHub repository! This repository contains the codebase for the backend of the Virtual Platform, a revolutionary initiative that aims to provide a federated ecosystem for discovering, querying, and accessing a wide range of resources relevant to rare disease (RD) research.
+
+## About VP-Portal Backend
+
+The EJP VP-Portal Backend serves as the foundational engine powering the EJP VP-Portal ecosystem. It offers an array of sophisticated functionalities, including advanced disease search capabilities, comprehensive disease hierarchy retrieval, precision gene mapping, efficient search autocompletion, robust resource monitoring service, seamless resource notification service, and an array of other distinctive features. These capabilities collectively aim to ensure an unparalleled user experience within the VP-Portal environment.
+
+## Table of Contents
+- [Installation](#installation)
+- [Dependencies](#dependencies)
+- [License](#license)
+- [Contact Information](#contact-information)
+
+## Installation
+To set up the VP-Portal Backend on your local environment, follow these steps:
+
+Clone this repository:
+```bash
+git clone https://github.com/ejp-rd-vp/vp-dp-backend.git
+```
+Navigate to the project directory:
+```bash
+cd vp-dp-backend
+```
+Build the application using Maven:
+```bash
+mvn clean install
+```
+Run the application:
+```bash
+java -jar target/vp-dp-backend.jar
+```
+The backend server will start, and you can access it at http://localhost:8095.
+
+## Dependencies
+
+The VP-Portal Backend is built using the Spring Boot framework and utilizes the following key dependencies:
+
+
+* Spring Boot: Apache License 2.0
+* Project Lombok: MIT License
+* PostgreSQL JDBC Driver: PostgreSQL License
+* Jackson Core: Apache License 2.0
+* JUnit Jupiter Engine: Eclipse Public License - v 1.0
+* H2 Database: H2 License
+* SpringDoc OpenAPI Starter WebMvc UI: Apache License 2.0
+* JavaMail API: Common Development and Distribution License (CDDL) v1.1 + GNU General Public License (GPL) v2
+
+
+## License
+
+This project is licensed under the [Apache License 2.0](https://github.com/ejp-rd-vp/vp-dp-backend/blob/develop/LICENSE).
+
+
+## Contact Information
+
+Stay connected with the VP-Portal community to receive updates, announcements, and insights. Follow us on [Twitter](https://twitter.com/ejprarediseases?lang=de) | [Instagram](https://www.instagram.com/ejprarediseases/?hl=de) and participate in discussions.
+
+If you encounter any issues, have questions, or need assistance, feel free to reach out to our community through GitHub issues or our communication channels. We're here to support you on your journey with VP-Portal Backend!

docker/Dockerfile

@@ -0,0 +1,8 @@
+FROM openjdk:18-jdk-alpine
+EXPOSE 8095
+RUN apk add sudo
+RUN addgroup -S ejp && adduser -S ejp -G ejp
+USER ejp:ejp
+ARG JAR_FILE=target/*.jar
+COPY ${JAR_FILE} /opt/app.jar
+ENTRYPOINT ["sh", "-c", "java ${JAVA_OPTS} -jar /opt/app.jar"]

pom.xml

@@ -15,6 +15,7 @@
 	<description>vp-dp-backend</description>
 	<properties>
 		<java.version>17</java.version>
+		<testcontainers.version>1.18.0</testcontainers.version>
 	</properties>
 	<dependencies>
 		<dependency>
@@ -87,11 +88,6 @@
 			<artifactId>junit</artifactId>
 			<scope>test</scope>
 		</dependency>
-		<dependency>
-			<groupId>com.h2database</groupId>
-			<artifactId>h2</artifactId>
-			<scope>test</scope>
-		</dependency>
 		<dependency>
 			<groupId>org.springdoc</groupId>
 			<artifactId>springdoc-openapi-starter-webmvc-ui</artifactId>
@@ -102,6 +98,12 @@
 			<artifactId>javax.mail</artifactId>
 			<version>1.6.2</version>
 		</dependency>
+		<dependency>
+			<groupId>org.testcontainers</groupId>
+			<artifactId>postgresql</artifactId>
+			<version>${testcontainers.version}</version>
+			<scope>test</scope>
+		</dependency>
 	</dependencies>
 
 	<build>