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Fix Substance Encodings #474

Merged
merged 10 commits into from
Feb 6, 2025
Merged

Fix Substance Encodings #474

merged 10 commits into from
Feb 6, 2025

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Scienfitz
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@Scienfitz Scienfitz commented Feb 1, 2025

scikit-fingerprints has updated to 1.13.0. This broke our tests. This is caused by some of the new feature names having duplicates.

  • bumped skfp version requirement to >=0.13.1
  • excluded yanked matplotlib version
  • Opened an issue with scikit-fingerprints which triggered a fixed release
  • Added support for the new BCUT2D fingerprint
  • Also: the docs fail due to botorch links, which seems to have moved host location. Those were also fixed.

Spaces in the feature names are replaced by underscore
@Scienfitz Scienfitz added bug Something isn't working documentation Improvements or additions to documentation enhancement Expand / change existing functionality labels Feb 1, 2025
@Scienfitz Scienfitz self-assigned this Feb 1, 2025
@Scienfitz Scienfitz force-pushed the fix/substance_encodings branch from 16e46a7 to 764038b Compare February 1, 2025 16:27
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baybe/parameters/substance.py Outdated Show resolved Hide resolved
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@Scienfitz Scienfitz force-pushed the fix/substance_encodings branch from ed516f0 to e594bcf Compare February 5, 2025 15:10
This is a safety net for the case that encodings provide duplicated column names (likely due to bugs)
Botorch seems to have moved hosting locations for the API
This reverts commit 417ffeb.Reverted because there is no easy way of checking the new warning in existing tests.
@Scienfitz Scienfitz force-pushed the fix/substance_encodings branch from e594bcf to 297668c Compare February 6, 2025 07:25
@Scienfitz Scienfitz merged commit d519024 into main Feb 6, 2025
7 of 11 checks passed
@Scienfitz Scienfitz deleted the fix/substance_encodings branch February 6, 2025 08:16
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2 participants