Analyses were conducted for the Massachusetts State Public Health Laboratory's Sequencing and Bioinformatics Core Division. The laboratories conducted sequencing of microbiological and viral isolates from hospitals, environmental sampling, and outbreak investigation across the Commonwealth of Massachusetts. I worked with the Sequencing Core to troubleshoot sequencing related issues and to visualize results. See Variant Analysis projects in Wastewater Analyses to see WGS results relating to wastewater monitoring.
- CT Values Analysis: Comparison of CT values across platforms and submitters for COVID-19 clinical samples.
- Variant Analysis: Visualizing COVID-19 variant frequencies in municipal wastewater.
- BI Group (ongoing)