README.md

2.RNA-seq

Table of Contents

• 2.1 Differential Expression
• 2.2 Alternative Splicing

More Reading about RNA-seq Analysis Pipelines

• Trapnell C et al. Nat Protoc. 2012, 7(3):562-78 Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Reference Link
• A survey of best practices for RNA-seq data analysis -- 2016
• RNA-seq analysis pipeline at GitHub: https://github.com/mgonzalezporta/TeachingMaterial
• lncRNA analysis pipeline: http://webhome.weizmann.ac.il/home/igoru/PLAR/
• (Deprecated) RNA-seq analysis pipeline @ Lu Lab: RNAfinder