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v0.3.0

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@epi2melabs-bot epi2melabs-bot released this 29 Jun 16:48
· 234 commits to master since this release

Fixed

  • Updated medaka to v1.4.3 for model pre-download.
  • Work around issue where pyvcf writes QUAL values as '.' and not 0.

Changed

  • Removed the autodetect sample_id option for now.
  • Updated default model to be a variant calling one. Although labelled as
    PromethION specific (_prom in name), this model should be preferred
    on all platforms of non-variant (consensus) platform specific models.
  • Derive software versions from CLI rather than conda list.

Added

  • Field alias in sample sheet CSV serves as alternative to sample_name.
  • Added V4 primerscheme to data directory.