v0.3.28

Fixed

• Fixed an error which was causing only a single sample to be processed, instead of all samples in the input FASTQ directory

v0.3.27

Added

• Configuration for running demo data in AWS

v0.3.26

Changed

• --basecall_cfg is now used to determine a suitable Medaka model, alternatively provide the name of a model with --medaka_variant_model to override automatic selection
• Update documentation

Fixed

• --report_detailed was causing an error in report generation, as it requires the telemetry JSON which the workflow is no longer using. This parameter has been removed (#79)

v0.3.25

Updated

• Implemented new fastqingress
• aplanat bumped to v0.6.16 to fix nextclade sequence view

v0.3.24

Fixed

• Custom primer schemes

v0.3.23

Changed

• medaka bumped to 1.7.2 (np-artic bump to 1.3.0_19)

Added

• medaka models for kit14 - R10.4.1

Fixed

• scheme directory bug in labs/windows (#73)

v0.3.22

Changed

• workflow-glue python psuedo package
• pangolin to 4.2
• nextclade to 2.11.0

Fixed

• scheme directory bug in labs/windows (#73)

Removed

• spike-seq primer schemes
• telemtry generation

v0.3.21

Fixed

• Updated sample sheet to expect a file

v0.3.20

Changed

• Updated description in manifest

v0.3.19

Changed

• Fastqingress metadata map
• Nextclade < v2.0.0 no longer supported
• Documentation
• pangolin to 4.1.3
• nextclade to 2.8.0

Fixed

• Metadata map handling