v0.2.0

Added

• Ability to configure depth coverage reporting value.
• Add explicit pins of conda packages.
• Inclusion of SpikeSeq workflow, and reporting.
• Optional auto-detection of sample_id

v0.1.4

Changed

• Improved display of coverage traces in report.

v0.1.3

Added

• Check format of sample sheet before executing main workflow.

Fixed

• Parsing of V1200 .bed file for nextclade report.
• Empty barcode directories are ignored.
• Nextclade report component upgraded to better handle poor data.

v0.1.2

Fixed

• Recovery after artic minion fails.

Added

• Report item detailing failed analyses.

v0.1.1

Fixed

• Correct value of wfversion in config.
• Processing of single sample inputs.

v0.1.0

Added

• Added variant call summary section to report.

v0.0.7

Changed

• Sample sheet is no longer required.
• Sort report items consistently by sample name.
• Nextclade visual will display overlap to primer scheme selected by user.

v0.0.6

Added

• Support for fragmented amplicons.
• Enabled use of conda profile.

Changed

• Use custom np-artic package based on 1.3.0-dev branch of original.
• Use nextclade from conda package
• Amended default local executor CPU resource to be more parsimonious.

v0.0.5

Changed

• Amended report text

v0.0.4

Changed

• Discretize coverage plots for speed