break up create_clean_reported_cases()
#2695
Workflow file for this run
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master, develop] | |
| pull_request: | |
| branches: [main, master, develop] | |
| merge_group: | |
| workflow_dispatch: | |
| name: test-coverage | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test-coverage: | |
| runs-on: macos-latest | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| NOT_CRAN: true | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: NA | |
| extra-packages: | | |
| covr | |
| stan-dev/cmdstanr | |
| testthat | |
| future | |
| future.apply | |
| - name: Install cmdstan | |
| if: runner.os != 'Windows' | |
| uses: epinowcast/actions/install-cmdstan@v1 | |
| with: | |
| cmdstan-version: 'latest' | |
| num-cores: 2 | |
| - name: Test coverage | |
| run: covr::codecov(quiet = FALSE) | |
| shell: Rscript {0} |