... in estimate_secondary not used
#1470
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| --- | |
| # Github Actions workflow to render EpiNow2 documents | |
| # yamllint disable rule:line-length | |
| name: Commands | |
| 'on': | |
| issue_comment: | |
| types: [created] | |
| jobs: | |
| document: | |
| if: contains(github.event.comment.body, '/document') | |
| name: document | |
| runs-on: macOS-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/pr-fetch@v2 | |
| with: | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: r-lib/actions/setup-r@v2 | |
| - name: Install dependencies | |
| run: Rscript -e 'install.packages(c("remotes", "roxygen2"))' -e 'remotes::install_deps(dependencies = TRUE)' | |
| - name: Document | |
| run: Rscript -e 'roxygen2::roxygenise()' | |
| - name: commit | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Actions" | |
| git add man/\* NAMESPACE | |
| git commit -m 'Document' | |
| - uses: r-lib/actions/pr-push@v2 | |
| with: | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| style: | |
| if: contains(github.event.comment.body, '/style') | |
| name: style | |
| runs-on: macOS-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/pr-fetch@v2 | |
| with: | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: r-lib/actions/setup-r@v2 | |
| - name: Install dependencies | |
| run: Rscript -e 'install.packages(c("styler", "roxygen2", "remotes"))' -e 'remotes::install_deps(dependencies = TRUE)' | |
| - name: Whitespace | |
| run: | | |
| find . -type f \( -name 'DESCRIPTION' -name "*.R" -o -name "*.stan" \) -exec sed -i '' -e 's/[ \t]*$//' {} \; | |
| - name: Style | |
| run: Rscript -e 'styler::style_pkg()' | |
| - name: Document | |
| run: Rscript -e 'roxygen2::roxygenise()' | |
| - name: commit | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Actions" | |
| git add \*.R | |
| git add \*.stan | |
| git add DESCRIPTION | |
| git add man/\* NAMESPACE | |
| git commit -m 'Style' | |
| - uses: r-lib/actions/pr-push@v2 | |
| with: | |
| repo-token: ${{ secrets.GITHUB_TOKEN }} |