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Update opts.R - remove linear kernel references
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seabbs authored Aug 28, 2024
1 parent a42f31d commit 5c39a86
Showing 1 changed file with 3 additions and 4 deletions.
7 changes: 3 additions & 4 deletions R/opts.R
Original file line number Diff line number Diff line change
Expand Up @@ -404,19 +404,18 @@ backcalc_opts <- function(prior = c("reports", "none", "infections"),
#' process. Custom settings can be supplied which override the defaults.
#'
#' @param ls_mean Numeric, defaults to 21 days. The mean of the lognormal
#' length scale. Not used for linear kernel.
#' length scale.
#'
#' @param ls_sd Numeric, defaults to 7 days. The standard deviation of the log
#' normal length scale. If \code{ls_sd = 0}, inverse-gamma prior on Gaussian
#' process length scale will be used with recommended parameters
#' \code{inv_gamma(1.499007, 0.057277 * ls_max)}. Not used for linear kernel.
#' \code{inv_gamma(1.499007, 0.057277 * ls_max)}.
#'
#' @param ls_min Numeric, defaults to 0. The minimum value of the length scale.
#' Not used for linear kernel.
#'
#' @param ls_max Numeric, defaults to 60. The maximum value of the length
#' scale. Updated in [create_gp_data()] to be the length of the input data if
#' this is smaller. Not used for linear kernel.
#' this is smaller.
#'
#' @param alpha_mean Numeric, defaults to 0. The mean of the magnitude parameter
#' of the Gaussian process kernel. Should be approximately the expected variance
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