accumulate after truncation

epiforecasts · Nov 23, 2024 · abb8d1c · abb8d1c
1 parent 9a8ef8e
commit abb8d1c
Showing 1 changed file with 7 additions and 7 deletions.
diff --git a/inst/stan/estimate_secondary.stan b/inst/stan/estimate_secondary.stan
@@ -73,13 +73,6 @@ transformed parameters {
    secondary = day_of_week_effect(secondary, day_of_week, day_of_week_simplex);
  }
 
- // accumulate reports
- if (any_accumulate) {
-   profile("accumulate") {
-     secondary = accumulate_reports(secondary, accumulate);
-   }
- }
-
  // truncate near time cases to observed reports
  if (trunc_id) {
     vector[delay_type_max[trunc_id]] trunc_rev_cmf = get_delay_rev_pmf(
@@ -90,6 +83,13 @@ transformed parameters {
     );
     secondary = truncate_obs(secondary, trunc_rev_cmf, 0);
  }
+
+ // accumulate reports
+ if (any_accumulate) {
+   profile("accumulate") {
+     secondary = accumulate_reports(secondary, accumulate);
+   }
+ }
 }
 
 model {