fix bug in ataqc

epigen-UCSD · Dec 20, 2017 · eda677d · eda677d
1 parent 0a176f6
commit eda677d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/ataqc/run_ataqc_single_lib.py b/ataqc/run_ataqc_single_lib.py
@@ -601,7 +601,7 @@ def get_samtools_flagstat(bam_file):
     return flagstat, mapped_reads
 
 
-def get_fract_mapq(bam_file, paired_status, ,q=30):
+def get_fract_mapq(bam_file, paired_status,q=30):
     '''
     Runs samtools view to get the fraction of reads of a certain
     map quality ( primary and have mate)