add multilevel IVA inputs (#1539)

Exec/RegTests/IsentropicVortex/inputs_advecting_ml

@@ -0,0 +1,73 @@
+# ------------------  INPUTS TO MAIN PROGRAM  -------------------
+max_step = 200
+
+amrex.fpe_trap_invalid = 1
+
+fabarray.mfiter_tile_size = 1024 1024 1024
+
+# PROBLEM SIZE & GEOMETRY
+geometry.prob_lo     = -12  -12  -1
+geometry.prob_hi     =  12   12   1
+amr.n_cell           =  48   48   4
+amr.n_cell           =  96   96   4
+
+geometry.is_periodic = 1 1 0
+
+zlo.type = "SlipWall"
+zhi.type = "SlipWall"
+
+# TIME STEP CONTROL
+erf.no_substepping = 1
+erf.fixed_dt           = 0.0005
+erf.fixed_dt           = 0.00025
+
+# DIAGNOSTICS & VERBOSITY
+erf.sum_interval    = 1       # timesteps between computing mass
+erf.v               = 1       # verbosity in ERF.cpp
+amr.v               = 1       # verbosity in Amr.cpp
+
+amr.max_level = 0
+
+################################ MULTILEVEL ################################
+amr.max_level = 1
+amr.ref_ratio_vect = 2 2 1 2 2 1
+
+erf.coupling_type = "TwoWay"
+erf.regrid_int = 2
+
+erf.refinement_indicators = lo_scalar
+
+erf.lo_scalar.max_level     = 2
+erf.lo_scalar.field_name    = scalar
+erf.lo_scalar.value_greater = 0.1
+
+amr.n_error_buf  = 3 3
+amr.grid_eff     = 0.8
+################################ MULTILEVEL ################################
+
+# CHECKPOINT FILES
+erf.check_file      = chk        # root name of checkpoint file
+erf.check_int       = 100        # number of timesteps between checkpoints
+
+# PLOTFILES
+erf.plot_file_1     = plt        # prefix of plotfile name
+erf.plot_int_1      = 10         # number of timesteps between plotfiles
+erf.plot_vars_1     = density x_velocity y_velocity z_velocity pressure theta temp scalar vorticity
+
+# SOLVER CHOICE
+erf.alpha_T = 0.0
+erf.alpha_C = 0.0
+erf.use_gravity = false
+
+erf.les_type         = "None"
+erf.molec_diff_type  = "None"
+erf.dynamicViscosity = 0.0
+
+# PROBLEM PARAMETERS
+prob.p_inf = 1e5  # reference pressure [Pa]
+prob.T_inf = 300. # reference temperature [K]
+prob.M_inf = 1.1952286093343936  # freestream Mach number [-]
+prob.alpha = 0.7853981633974483  # inflow angle, 0 --> x-aligned [rad]
+prob.beta  = 1.1088514254079065 # non-dimensional max perturbation strength [-]
+prob.R     = 1.0  # characteristic length scale for grid [m]
+prob.sigma = 1.0  # Gaussian standard deviation [-]

Exec/RegTests/IsentropicVortex/prob.cpp

@@ -125,7 +125,10 @@ Problem::init_custom_pert(
     state_pert(i, j, k, RhoTheta_comp) = rho_theta - getRhoThetagivenP(p_hse(i,j,k)); // Set the perturbation rho*theta
 
     // Set scalar = 0 -- unused
-    state_pert(i, j, k, RhoScalar_comp) = 0.0;
+    // state_pert(i, j, k, RhoScalar_comp) = 0.0;
+
+    const Real r2d_xy = std::sqrt((x-xc)*(x-xc) + (y-yc)*(y-yc));
+    state_pert(i, j, k, RhoScalar_comp) = 0.25 * (1.0 + std::cos(PI * std::min(r2d_xy, R) / R));
 
     if (use_moisture) {
         state_pert(i, j, k, RhoQ1_comp) = 0.0;