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diff --git a/ABLMost_8H_source.html b/ABLMost_8H_source.html
diff --git a/ComputeTurbulentViscosity_8cpp.html b/ComputeTurbulentViscosity_8cpp.html
@@ -1160,7 +1160,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#aaeb097fbfb689e982d4bba3f
 <div class="line"><a name="l00227"></a><span class="lineno">  227</span>&#160; </div>
 <div class="line"><a name="l00228"></a><span class="lineno">  228</span>&#160;          amrex::Real SM = (R2*E2 - R1*E4)/(E2*E3 - E1*E4);</div>
 <div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;          amrex::Real SH = (R1*E3 - R2*E1)/(E2*E3 - E1*E4);</div>
-<div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160;          amrex::Real SQ = 3.0 * SM;</div>
+<div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160;          amrex::Real SQ = 3.0 * SM; <span class="comment">// Nakanishi &amp; Niino 2009</span></div>
 <div class="line"><a name="l00231"></a><span class="lineno">  231</span>&#160; </div>
 <div class="line"><a name="l00232"></a><span class="lineno">  232</span>&#160;          <span class="comment">// Finally, compute the eddy viscosity/diffusivities</span></div>
 <div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;          <span class="keyword">const</span> amrex::Real <a class="code" href="namespaceMicVar.html#acd493faf19b45ab11b9a01e722762798a2534fc55b1bd99268d18c38ddd112e53">rho</a> = cell_data(i,j,k,<a class="code" href="IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>);</div>

diff --git a/DataStruct_8H_source.html b/DataStruct_8H_source.html
diff --git a/ERF_8H_source.html b/ERF_8H_source.html
diff --git a/ERF__make__buoyancy_8cpp.html b/ERF__make__buoyancy_8cpp.html
@@ -531,9 +531,9 @@ <h2 class="memtitle"><span class="permalink"><a href="#a913df66556ad8d7c7538e09e
 <div class="ttc" id="aIndexDefines_8H_html_a8b9c5b827b61f426a3879bc5d2883040"><div class="ttname"><a href="IndexDefines_8H.html#a8b9c5b827b61f426a3879bc5d2883040">PrimTheta_comp</a></div><div class="ttdeci">#define PrimTheta_comp</div><div class="ttdef"><b>Definition:</b> IndexDefines.H:30</div></div>
 <div class="ttc" id="aclassPlaneAverage_html"><div class="ttname"><a href="classPlaneAverage.html">PlaneAverage</a></div><div class="ttdef"><b>Definition:</b> PlaneAverage.H:13</div></div>
 <div class="ttc" id="anamespaceIntVar_html_ae96c1cd796f723e15dfbf718f1a9c76da22501eeeb48d3d47f802dcb78c88f7ae"><div class="ttname"><a href="namespaceIntVar.html#ae96c1cd796f723e15dfbf718f1a9c76da22501eeeb48d3d47f802dcb78c88f7ae">IntVar::cons</a></div><div class="ttdeci">@ cons</div><div class="ttdef"><b>Definition:</b> IndexDefines.H:182</div></div>
-<div class="ttc" id="astructSolverChoice_html_a47a54f2e44955202b5b437e4b1b4a61b"><div class="ttname"><a href="structSolverChoice.html#a47a54f2e44955202b5b437e4b1b4a61b">SolverChoice::gravity</a></div><div class="ttdeci">amrex::Real gravity</div><div class="ttdef"><b>Definition:</b> DataStruct.H:277</div></div>
-<div class="ttc" id="astructSolverChoice_html_ad6ee95a1f016f6f236f26144dbf234d0"><div class="ttname"><a href="structSolverChoice.html#ad6ee95a1f016f6f236f26144dbf234d0">SolverChoice::buoyancy_type</a></div><div class="ttdeci">int buoyancy_type</div><div class="ttdef"><b>Definition:</b> DataStruct.H:260</div></div>
-<div class="ttc" id="astructSolverChoice_html_afdd906d035384fd962efab24e7a6da7c"><div class="ttname"><a href="structSolverChoice.html#afdd906d035384fd962efab24e7a6da7c">SolverChoice::ave_plane</a></div><div class="ttdeci">int ave_plane</div><div class="ttdef"><b>Definition:</b> DataStruct.H:307</div></div>
+<div class="ttc" id="astructSolverChoice_html_a47a54f2e44955202b5b437e4b1b4a61b"><div class="ttname"><a href="structSolverChoice.html#a47a54f2e44955202b5b437e4b1b4a61b">SolverChoice::gravity</a></div><div class="ttdeci">amrex::Real gravity</div><div class="ttdef"><b>Definition:</b> DataStruct.H:283</div></div>
+<div class="ttc" id="astructSolverChoice_html_ad6ee95a1f016f6f236f26144dbf234d0"><div class="ttname"><a href="structSolverChoice.html#ad6ee95a1f016f6f236f26144dbf234d0">SolverChoice::buoyancy_type</a></div><div class="ttdeci">int buoyancy_type</div><div class="ttdef"><b>Definition:</b> DataStruct.H:266</div></div>
+<div class="ttc" id="astructSolverChoice_html_afdd906d035384fd962efab24e7a6da7c"><div class="ttname"><a href="structSolverChoice.html#afdd906d035384fd962efab24e7a6da7c">SolverChoice::ave_plane</a></div><div class="ttdeci">int ave_plane</div><div class="ttdef"><b>Definition:</b> DataStruct.H:313</div></div>
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diff --git a/ERF__slow__rhs__inc_8cpp.html b/ERF__slow__rhs__inc_8cpp.html
@@ -1226,23 +1226,23 @@ <h2 class="memtitle"><span class="permalink"><a href="#a9f99455c5a8615bf8bfc30d4
 <div class="ttc" id="anamespaceVars_html_a2aa680f90abb6ff6d5c1875f8beb4b1ca81793b83204cfa56d4683bc676fbbfb6"><div class="ttname"><a href="namespaceVars.html#a2aa680f90abb6ff6d5c1875f8beb4b1ca81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a></div><div class="ttdeci">@ yvel</div><div class="ttdef"><b>Definition:</b> IndexDefines.H:82</div></div>
 <div class="ttc" id="astructDiffChoice_html"><div class="ttname"><a href="structDiffChoice.html">DiffChoice</a></div><div class="ttdef"><b>Definition:</b> DiffStruct.H:19</div></div>
 <div class="ttc" id="astructDiffChoice_html_aed5c75ec58e358a735d97869147b2baf"><div class="ttname"><a href="structDiffChoice.html#aed5c75ec58e358a735d97869147b2baf">DiffChoice::molec_diff_type</a></div><div class="ttdeci">MolecDiffType molec_diff_type</div><div class="ttdef"><b>Definition:</b> DiffStruct.H:76</div></div>
-<div class="ttc" id="astructSolverChoice_html_a063a88594452100497651e8aaf1f68d7"><div class="ttname"><a href="structSolverChoice.html#a063a88594452100497651e8aaf1f68d7">SolverChoice::use_terrain</a></div><div class="ttdeci">bool use_terrain</div><div class="ttdef"><b>Definition:</b> DataStruct.H:255</div></div>
-<div class="ttc" id="astructSolverChoice_html_a06a0dd1c8f7c1ed73a4f8d24b6b31cdf"><div class="ttname"><a href="structSolverChoice.html#a06a0dd1c8f7c1ed73a4f8d24b6b31cdf">SolverChoice::rayleigh_damp_T</a></div><div class="ttdeci">bool rayleigh_damp_T</div><div class="ttdef"><b>Definition:</b> DataStruct.H:271</div></div>
-<div class="ttc" id="astructSolverChoice_html_a1163778ed56af6977001ef4ec55a3da3"><div class="ttname"><a href="structSolverChoice.html#a1163778ed56af6977001ef4ec55a3da3">SolverChoice::coriolis_factor</a></div><div class="ttdeci">amrex::Real coriolis_factor</div><div class="ttdef"><b>Definition:</b> DataStruct.H:295</div></div>
-<div class="ttc" id="astructSolverChoice_html_a1bae456f7b26e8ed50d78ce1af1b5ef0"><div class="ttname"><a href="structSolverChoice.html#a1bae456f7b26e8ed50d78ce1af1b5ef0">SolverChoice::rayleigh_damp_V</a></div><div class="ttdeci">bool rayleigh_damp_V</div><div class="ttdef"><b>Definition:</b> DataStruct.H:269</div></div>
-<div class="ttc" id="astructSolverChoice_html_a27ced9266434a4680ef175e7b2ba8f01"><div class="ttname"><a href="structSolverChoice.html#a27ced9266434a4680ef175e7b2ba8f01">SolverChoice::use_rayleigh_damping</a></div><div class="ttdeci">bool use_rayleigh_damping</div><div class="ttdef"><b>Definition:</b> DataStruct.H:266</div></div>
-<div class="ttc" id="astructSolverChoice_html_a396122e87a3d15c4ec8666d7dd18c095"><div class="ttname"><a href="structSolverChoice.html#a396122e87a3d15c4ec8666d7dd18c095">SolverChoice::diffChoice</a></div><div class="ttdeci">DiffChoice diffChoice</div><div class="ttdef"><b>Definition:</b> DataStruct.H:242</div></div>
-<div class="ttc" id="astructSolverChoice_html_a411fbfea721cd40033e113cf54a8047f"><div class="ttname"><a href="structSolverChoice.html#a411fbfea721cd40033e113cf54a8047f">SolverChoice::cosphi</a></div><div class="ttdeci">amrex::Real cosphi</div><div class="ttdef"><b>Definition:</b> DataStruct.H:296</div></div>
-<div class="ttc" id="astructSolverChoice_html_a47a54f2e44955202b5b437e4b1b4a61b"><div class="ttname"><a href="structSolverChoice.html#a47a54f2e44955202b5b437e4b1b4a61b">SolverChoice::gravity</a></div><div class="ttdeci">amrex::Real gravity</div><div class="ttdef"><b>Definition:</b> DataStruct.H:277</div></div>
-<div class="ttc" id="astructSolverChoice_html_a5147634b7c1414a7694c59c1b4a88d69"><div class="ttname"><a href="structSolverChoice.html#a5147634b7c1414a7694c59c1b4a88d69">SolverChoice::abl_geo_forcing</a></div><div class="ttdeci">amrex::GpuArray&lt; amrex::Real, AMREX_SPACEDIM &gt; abl_geo_forcing</div><div class="ttdef"><b>Definition:</b> DataStruct.H:305</div></div>
-<div class="ttc" id="astructSolverChoice_html_a5aed4016dd7d17a2d2904c60af59ae9d"><div class="ttname"><a href="structSolverChoice.html#a5aed4016dd7d17a2d2904c60af59ae9d">SolverChoice::rayleigh_damp_U</a></div><div class="ttdeci">bool rayleigh_damp_U</div><div class="ttdef"><b>Definition:</b> DataStruct.H:268</div></div>
-<div class="ttc" id="astructSolverChoice_html_a6426e150ba9c1ba2e14151228bf6ffaf"><div class="ttname"><a href="structSolverChoice.html#a6426e150ba9c1ba2e14151228bf6ffaf">SolverChoice::sinphi</a></div><div class="ttdeci">amrex::Real sinphi</div><div class="ttdef"><b>Definition:</b> DataStruct.H:297</div></div>
-<div class="ttc" id="astructSolverChoice_html_a69e2f0b874cba8faae57987ead4e3ebb"><div class="ttname"><a href="structSolverChoice.html#a69e2f0b874cba8faae57987ead4e3ebb">SolverChoice::abl_pressure_grad</a></div><div class="ttdeci">amrex::GpuArray&lt; amrex::Real, AMREX_SPACEDIM &gt; abl_pressure_grad</div><div class="ttdef"><b>Definition:</b> DataStruct.H:304</div></div>
-<div class="ttc" id="astructSolverChoice_html_a6dba64151e2e2f958e7c0e55db477bf2"><div class="ttname"><a href="structSolverChoice.html#a6dba64151e2e2f958e7c0e55db477bf2">SolverChoice::NumDiffCoeff</a></div><div class="ttdeci">amrex::Real NumDiffCoeff</div><div class="ttdef"><b>Definition:</b> DataStruct.H:301</div></div>
-<div class="ttc" id="astructSolverChoice_html_a9e86533aa6df5bf6408d91f0dfd23606"><div class="ttname"><a href="structSolverChoice.html#a9e86533aa6df5bf6408d91f0dfd23606">SolverChoice::use_coriolis</a></div><div class="ttdeci">bool use_coriolis</div><div class="ttdef"><b>Definition:</b> DataStruct.H:265</div></div>
-<div class="ttc" id="astructSolverChoice_html_aa2de671156cccf1f3a34b9f250fb0e28"><div class="ttname"><a href="structSolverChoice.html#aa2de671156cccf1f3a34b9f250fb0e28">SolverChoice::use_NumDiff</a></div><div class="ttdeci">bool use_NumDiff</div><div class="ttdef"><b>Definition:</b> DataStruct.H:300</div></div>
-<div class="ttc" id="astructSolverChoice_html_aa53b017d79e0067923180a0aa59367b4"><div class="ttname"><a href="structSolverChoice.html#aa53b017d79e0067923180a0aa59367b4">SolverChoice::turbChoice</a></div><div class="ttdeci">amrex::Vector&lt; TurbChoice &gt; turbChoice</div><div class="ttdef"><b>Definition:</b> DataStruct.H:244</div></div>
-<div class="ttc" id="astructSolverChoice_html_abf35af2e52f5c1197264d895396ca59c"><div class="ttname"><a href="structSolverChoice.html#abf35af2e52f5c1197264d895396ca59c">SolverChoice::rayleigh_damp_W</a></div><div class="ttdeci">bool rayleigh_damp_W</div><div class="ttdef"><b>Definition:</b> DataStruct.H:270</div></div>
+<div class="ttc" id="astructSolverChoice_html_a063a88594452100497651e8aaf1f68d7"><div class="ttname"><a href="structSolverChoice.html#a063a88594452100497651e8aaf1f68d7">SolverChoice::use_terrain</a></div><div class="ttdeci">bool use_terrain</div><div class="ttdef"><b>Definition:</b> DataStruct.H:261</div></div>
+<div class="ttc" id="astructSolverChoice_html_a06a0dd1c8f7c1ed73a4f8d24b6b31cdf"><div class="ttname"><a href="structSolverChoice.html#a06a0dd1c8f7c1ed73a4f8d24b6b31cdf">SolverChoice::rayleigh_damp_T</a></div><div class="ttdeci">bool rayleigh_damp_T</div><div class="ttdef"><b>Definition:</b> DataStruct.H:277</div></div>
+<div class="ttc" id="astructSolverChoice_html_a1163778ed56af6977001ef4ec55a3da3"><div class="ttname"><a href="structSolverChoice.html#a1163778ed56af6977001ef4ec55a3da3">SolverChoice::coriolis_factor</a></div><div class="ttdeci">amrex::Real coriolis_factor</div><div class="ttdef"><b>Definition:</b> DataStruct.H:301</div></div>
+<div class="ttc" id="astructSolverChoice_html_a1bae456f7b26e8ed50d78ce1af1b5ef0"><div class="ttname"><a href="structSolverChoice.html#a1bae456f7b26e8ed50d78ce1af1b5ef0">SolverChoice::rayleigh_damp_V</a></div><div class="ttdeci">bool rayleigh_damp_V</div><div class="ttdef"><b>Definition:</b> DataStruct.H:275</div></div>
+<div class="ttc" id="astructSolverChoice_html_a27ced9266434a4680ef175e7b2ba8f01"><div class="ttname"><a href="structSolverChoice.html#a27ced9266434a4680ef175e7b2ba8f01">SolverChoice::use_rayleigh_damping</a></div><div class="ttdeci">bool use_rayleigh_damping</div><div class="ttdef"><b>Definition:</b> DataStruct.H:272</div></div>
+<div class="ttc" id="astructSolverChoice_html_a396122e87a3d15c4ec8666d7dd18c095"><div class="ttname"><a href="structSolverChoice.html#a396122e87a3d15c4ec8666d7dd18c095">SolverChoice::diffChoice</a></div><div class="ttdeci">DiffChoice diffChoice</div><div class="ttdef"><b>Definition:</b> DataStruct.H:248</div></div>
+<div class="ttc" id="astructSolverChoice_html_a411fbfea721cd40033e113cf54a8047f"><div class="ttname"><a href="structSolverChoice.html#a411fbfea721cd40033e113cf54a8047f">SolverChoice::cosphi</a></div><div class="ttdeci">amrex::Real cosphi</div><div class="ttdef"><b>Definition:</b> DataStruct.H:302</div></div>
+<div class="ttc" id="astructSolverChoice_html_a47a54f2e44955202b5b437e4b1b4a61b"><div class="ttname"><a href="structSolverChoice.html#a47a54f2e44955202b5b437e4b1b4a61b">SolverChoice::gravity</a></div><div class="ttdeci">amrex::Real gravity</div><div class="ttdef"><b>Definition:</b> DataStruct.H:283</div></div>
+<div class="ttc" id="astructSolverChoice_html_a5147634b7c1414a7694c59c1b4a88d69"><div class="ttname"><a href="structSolverChoice.html#a5147634b7c1414a7694c59c1b4a88d69">SolverChoice::abl_geo_forcing</a></div><div class="ttdeci">amrex::GpuArray&lt; amrex::Real, AMREX_SPACEDIM &gt; abl_geo_forcing</div><div class="ttdef"><b>Definition:</b> DataStruct.H:311</div></div>
+<div class="ttc" id="astructSolverChoice_html_a5aed4016dd7d17a2d2904c60af59ae9d"><div class="ttname"><a href="structSolverChoice.html#a5aed4016dd7d17a2d2904c60af59ae9d">SolverChoice::rayleigh_damp_U</a></div><div class="ttdeci">bool rayleigh_damp_U</div><div class="ttdef"><b>Definition:</b> DataStruct.H:274</div></div>
+<div class="ttc" id="astructSolverChoice_html_a6426e150ba9c1ba2e14151228bf6ffaf"><div class="ttname"><a href="structSolverChoice.html#a6426e150ba9c1ba2e14151228bf6ffaf">SolverChoice::sinphi</a></div><div class="ttdeci">amrex::Real sinphi</div><div class="ttdef"><b>Definition:</b> DataStruct.H:303</div></div>
+<div class="ttc" id="astructSolverChoice_html_a69e2f0b874cba8faae57987ead4e3ebb"><div class="ttname"><a href="structSolverChoice.html#a69e2f0b874cba8faae57987ead4e3ebb">SolverChoice::abl_pressure_grad</a></div><div class="ttdeci">amrex::GpuArray&lt; amrex::Real, AMREX_SPACEDIM &gt; abl_pressure_grad</div><div class="ttdef"><b>Definition:</b> DataStruct.H:310</div></div>
+<div class="ttc" id="astructSolverChoice_html_a6dba64151e2e2f958e7c0e55db477bf2"><div class="ttname"><a href="structSolverChoice.html#a6dba64151e2e2f958e7c0e55db477bf2">SolverChoice::NumDiffCoeff</a></div><div class="ttdeci">amrex::Real NumDiffCoeff</div><div class="ttdef"><b>Definition:</b> DataStruct.H:307</div></div>
+<div class="ttc" id="astructSolverChoice_html_a9e86533aa6df5bf6408d91f0dfd23606"><div class="ttname"><a href="structSolverChoice.html#a9e86533aa6df5bf6408d91f0dfd23606">SolverChoice::use_coriolis</a></div><div class="ttdeci">bool use_coriolis</div><div class="ttdef"><b>Definition:</b> DataStruct.H:271</div></div>
+<div class="ttc" id="astructSolverChoice_html_aa2de671156cccf1f3a34b9f250fb0e28"><div class="ttname"><a href="structSolverChoice.html#aa2de671156cccf1f3a34b9f250fb0e28">SolverChoice::use_NumDiff</a></div><div class="ttdeci">bool use_NumDiff</div><div class="ttdef"><b>Definition:</b> DataStruct.H:306</div></div>
+<div class="ttc" id="astructSolverChoice_html_aa53b017d79e0067923180a0aa59367b4"><div class="ttname"><a href="structSolverChoice.html#aa53b017d79e0067923180a0aa59367b4">SolverChoice::turbChoice</a></div><div class="ttdeci">amrex::Vector&lt; TurbChoice &gt; turbChoice</div><div class="ttdef"><b>Definition:</b> DataStruct.H:250</div></div>
+<div class="ttc" id="astructSolverChoice_html_abf35af2e52f5c1197264d895396ca59c"><div class="ttname"><a href="structSolverChoice.html#abf35af2e52f5c1197264d895396ca59c">SolverChoice::rayleigh_damp_W</a></div><div class="ttdeci">bool rayleigh_damp_W</div><div class="ttdef"><b>Definition:</b> DataStruct.H:276</div></div>
 <div class="ttc" id="astructTurbChoice_html"><div class="ttname"><a href="structTurbChoice.html">TurbChoice</a></div><div class="ttdef"><b>Definition:</b> TurbStruct.H:16</div></div>
 <div class="ttc" id="astructTurbChoice_html_a15b9bb58cde72bab3f5714934125f3f9"><div class="ttname"><a href="structTurbChoice.html#a15b9bb58cde72bab3f5714934125f3f9">TurbChoice::pbl_type</a></div><div class="ttdeci">PBLType pbl_type</div><div class="ttdef"><b>Definition:</b> TurbStruct.H:272</div></div>
 <div class="ttc" id="astructTurbChoice_html_abbba68e0d699dd97701d31a0e37d5304"><div class="ttname"><a href="structTurbChoice.html#abbba68e0d699dd97701d31a0e37d5304">TurbChoice::les_type</a></div><div class="ttdeci">LESType les_type</div><div class="ttdef"><b>Definition:</b> TurbStruct.H:249</div></div>