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diff --git a/ERF__ComputeDiffusivityMYNN25_8cpp.html b/ERF__ComputeDiffusivityMYNN25_8cpp.html
@@ -503,8 +503,8 @@ <h2 class="memtitle"><span class="permalink"><a href="#a391c08e1e3f5dbbe1bc501f0
 <div class="ttc" id="anamespaceMicVar__SatAdj_html_a67f79eb3aec51f24fc079fab6bd0d638aea3777efcbbb3712ce373924287c2cb3"><div class="ttname"><a href="namespaceMicVar__SatAdj.html#a67f79eb3aec51f24fc079fab6bd0d638aea3777efcbbb3712ce373924287c2cb3">MicVar_SatAdj::qc</a></div><div class="ttdeci">@ qc</div><div class="ttdef"><b>Definition:</b> ERF_SatAdj.H:36</div></div>
 <div class="ttc" id="anamespaceVars_html_a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c"><div class="ttname"><a href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a></div><div class="ttdeci">@ xvel</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:130</div></div>
 <div class="ttc" id="anamespaceVars_html_a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6"><div class="ttname"><a href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a></div><div class="ttdeci">@ yvel</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:131</div></div>
-<div class="ttc" id="astructTurbChoice_html_a11fd9429567c4dd4afa871170580aed0"><div class="ttname"><a href="structTurbChoice.html#a11fd9429567c4dd4afa871170580aed0">TurbChoice::pbl_mynn</a></div><div class="ttdeci">MYNNLevel25 pbl_mynn</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:203</div></div>
-<div class="ttc" id="astructTurbChoice_html_a475d862a63ab672577fc2429f535feb9"><div class="ttname"><a href="structTurbChoice.html#a475d862a63ab672577fc2429f535feb9">TurbChoice::pbl_mynn_level2</a></div><div class="ttdeci">MYNNLevel2 pbl_mynn_level2</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:204</div></div>
+<div class="ttc" id="astructTurbChoice_html_a11fd9429567c4dd4afa871170580aed0"><div class="ttname"><a href="structTurbChoice.html#a11fd9429567c4dd4afa871170580aed0">TurbChoice::pbl_mynn</a></div><div class="ttdeci">MYNNLevel25 pbl_mynn</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:204</div></div>
+<div class="ttc" id="astructTurbChoice_html_a475d862a63ab672577fc2429f535feb9"><div class="ttname"><a href="structTurbChoice.html#a475d862a63ab672577fc2429f535feb9">TurbChoice::pbl_mynn_level2</a></div><div class="ttdeci">MYNNLevel2 pbl_mynn_level2</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:205</div></div>
 </div><!-- fragment -->
 <p class="reference">Referenced by <a class="el" href="ERF__ComputeTurbulentViscosity_8cpp.html#a3865612b809df828f44e9c18218b1e37">ComputeTurbulentViscosity()</a>.</p>
 <div class="dynheader">

diff --git a/ERF__ComputeDiffusivityYSU_8cpp.html b/ERF__ComputeDiffusivityYSU_8cpp.html
@@ -483,10 +483,10 @@ <h2 class="memtitle"><span class="permalink"><a href="#a22f1a268ea7d16d0817f082a
 <div class="ttc" id="anamespaceMicVar__Kess_html_ad6f84c7e649afdd998b2f37ba87476bea89de8c3bfc941080efb960e5119fbd61"><div class="ttname"><a href="namespaceMicVar__Kess.html#ad6f84c7e649afdd998b2f37ba87476bea89de8c3bfc941080efb960e5119fbd61">MicVar_Kess::rho</a></div><div class="ttdeci">@ rho</div><div class="ttdef"><b>Definition:</b> ERF_Kessler.H:30</div></div>
 <div class="ttc" id="anamespaceVars_html_a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c"><div class="ttname"><a href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a></div><div class="ttdeci">@ xvel</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:130</div></div>
 <div class="ttc" id="anamespaceVars_html_a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6"><div class="ttname"><a href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a></div><div class="ttdeci">@ yvel</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:131</div></div>
-<div class="ttc" id="astructTurbChoice_html_a96c1a42307db82ece270acdac75da9a3"><div class="ttname"><a href="structTurbChoice.html#a96c1a42307db82ece270acdac75da9a3">TurbChoice::pbl_ysu_land_Ribcr</a></div><div class="ttdeci">amrex::Real pbl_ysu_land_Ribcr</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:211</div></div>
-<div class="ttc" id="astructTurbChoice_html_ac20bc5ed8f1482a520b623dc9cc1ef52"><div class="ttname"><a href="structTurbChoice.html#ac20bc5ed8f1482a520b623dc9cc1ef52">TurbChoice::pbl_ysu_coriolis_freq</a></div><div class="ttdeci">amrex::Real pbl_ysu_coriolis_freq</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:208</div></div>
-<div class="ttc" id="astructTurbChoice_html_ac49c18b95424fe04c6a7c8eec934ec36"><div class="ttname"><a href="structTurbChoice.html#ac49c18b95424fe04c6a7c8eec934ec36">TurbChoice::pbl_ysu_force_over_water</a></div><div class="ttdeci">bool pbl_ysu_force_over_water</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:210</div></div>
-<div class="ttc" id="astructTurbChoice_html_af274e04335b259bb7b35f7c836f8310f"><div class="ttname"><a href="structTurbChoice.html#af274e04335b259bb7b35f7c836f8310f">TurbChoice::pbl_ysu_unst_Ribcr</a></div><div class="ttdeci">amrex::Real pbl_ysu_unst_Ribcr</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:212</div></div>
+<div class="ttc" id="astructTurbChoice_html_a96c1a42307db82ece270acdac75da9a3"><div class="ttname"><a href="structTurbChoice.html#a96c1a42307db82ece270acdac75da9a3">TurbChoice::pbl_ysu_land_Ribcr</a></div><div class="ttdeci">amrex::Real pbl_ysu_land_Ribcr</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:212</div></div>
+<div class="ttc" id="astructTurbChoice_html_ac20bc5ed8f1482a520b623dc9cc1ef52"><div class="ttname"><a href="structTurbChoice.html#ac20bc5ed8f1482a520b623dc9cc1ef52">TurbChoice::pbl_ysu_coriolis_freq</a></div><div class="ttdeci">amrex::Real pbl_ysu_coriolis_freq</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:209</div></div>
+<div class="ttc" id="astructTurbChoice_html_ac49c18b95424fe04c6a7c8eec934ec36"><div class="ttname"><a href="structTurbChoice.html#ac49c18b95424fe04c6a7c8eec934ec36">TurbChoice::pbl_ysu_force_over_water</a></div><div class="ttdeci">bool pbl_ysu_force_over_water</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:211</div></div>
+<div class="ttc" id="astructTurbChoice_html_af274e04335b259bb7b35f7c836f8310f"><div class="ttname"><a href="structTurbChoice.html#af274e04335b259bb7b35f7c836f8310f">TurbChoice::pbl_ysu_unst_Ribcr</a></div><div class="ttdeci">amrex::Real pbl_ysu_unst_Ribcr</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:213</div></div>
 </div><!-- fragment -->
 <p class="reference">Referenced by <a class="el" href="ERF__ComputeTurbulentViscosity_8cpp.html#a3865612b809df828f44e9c18218b1e37">ComputeTurbulentViscosity()</a>.</p>
 <div class="dynheader">

diff --git a/ERF__ComputeTurbulentViscosity_8cpp.html b/ERF__ComputeTurbulentViscosity_8cpp.html
@@ -397,8 +397,8 @@ <h2 class="memtitle"><span class="permalink"><a href="#a3865612b809df828f44e9c18
 <div class="ttc" id="astructSolverChoice_html_a9ac649bbebc73403e291d2af180d4061"><div class="ttname"><a href="structSolverChoice.html#a9ac649bbebc73403e291d2af180d4061">SolverChoice::RhoQv_comp</a></div><div class="ttdeci">int RhoQv_comp</div><div class="ttdef"><b>Definition:</b> ERF_DataStruct.H:689</div></div>
 <div class="ttc" id="astructSolverChoice_html_aa53b017d79e0067923180a0aa59367b4"><div class="ttname"><a href="structSolverChoice.html#aa53b017d79e0067923180a0aa59367b4">SolverChoice::turbChoice</a></div><div class="ttdeci">amrex::Vector&lt; TurbChoice &gt; turbChoice</div><div class="ttdef"><b>Definition:</b> ERF_DataStruct.H:590</div></div>
 <div class="ttc" id="astructTurbChoice_html"><div class="ttname"><a href="structTurbChoice.html">TurbChoice</a></div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:31</div></div>
-<div class="ttc" id="astructTurbChoice_html_a15b9bb58cde72bab3f5714934125f3f9"><div class="ttname"><a href="structTurbChoice.html#a15b9bb58cde72bab3f5714934125f3f9">TurbChoice::pbl_type</a></div><div class="ttdeci">PBLType pbl_type</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:201</div></div>
-<div class="ttc" id="astructTurbChoice_html_abbba68e0d699dd97701d31a0e37d5304"><div class="ttname"><a href="structTurbChoice.html#abbba68e0d699dd97701d31a0e37d5304">TurbChoice::les_type</a></div><div class="ttdeci">LESType les_type</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:175</div></div>
+<div class="ttc" id="astructTurbChoice_html_a15b9bb58cde72bab3f5714934125f3f9"><div class="ttname"><a href="structTurbChoice.html#a15b9bb58cde72bab3f5714934125f3f9">TurbChoice::pbl_type</a></div><div class="ttdeci">PBLType pbl_type</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:202</div></div>
+<div class="ttc" id="astructTurbChoice_html_abbba68e0d699dd97701d31a0e37d5304"><div class="ttname"><a href="structTurbChoice.html#abbba68e0d699dd97701d31a0e37d5304">TurbChoice::les_type</a></div><div class="ttdeci">LESType les_type</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:173</div></div>
 </div><!-- fragment -->
 <p class="reference">Referenced by <a class="el" href="classERF.html#af836d1bb05ac4c9f535358e14714f13e">ERF::advance_dycore()</a>.</p>
 <div class="dynheader">
@@ -970,13 +970,13 @@ <h2 class="memtitle"><span class="permalink"><a href="#a730dd933a41b48fe17b15e46
 <div class="ttc" id="anamespaceEddyDiff_html_a7e7e94a6b49fe20d106a1ea7317d149eaa3900ab375460932d825b615bb532446"><div class="ttname"><a href="namespaceEddyDiff.html#a7e7e94a6b49fe20d106a1ea7317d149eaa3900ab375460932d825b615bb532446">EddyDiff::NumDiffs</a></div><div class="ttdeci">@ NumDiffs</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:162</div></div>
 <div class="ttc" id="anamespaceEddyDiff_html_a7e7e94a6b49fe20d106a1ea7317d149eafa0c87454b22a819e328491f78bf6767"><div class="ttname"><a href="namespaceEddyDiff.html#a7e7e94a6b49fe20d106a1ea7317d149eafa0c87454b22a819e328491f78bf6767">EddyDiff::KE_h</a></div><div class="ttdeci">@ KE_h</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:153</div></div>
 <div class="ttc" id="astructTurbChoice_html_a0bb2b38f64a12b0b50552e05dee629e7"><div class="ttname"><a href="structTurbChoice.html#a0bb2b38f64a12b0b50552e05dee629e7">TurbChoice::sigma_k</a></div><div class="ttdeci">amrex::Real sigma_k</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:193</div></div>
-<div class="ttc" id="astructTurbChoice_html_a2daa4d23f9d89ee777a0d0fbd43196b6"><div class="ttname"><a href="structTurbChoice.html#a2daa4d23f9d89ee777a0d0fbd43196b6">TurbChoice::Sc_t_inv</a></div><div class="ttdeci">amrex::Real Sc_t_inv</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:185</div></div>
+<div class="ttc" id="astructTurbChoice_html_a2daa4d23f9d89ee777a0d0fbd43196b6"><div class="ttname"><a href="structTurbChoice.html#a2daa4d23f9d89ee777a0d0fbd43196b6">TurbChoice::Sc_t_inv</a></div><div class="ttdeci">amrex::Real Sc_t_inv</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:181</div></div>
 <div class="ttc" id="astructTurbChoice_html_a61ff7dc6ee4001ae8f2978efd5ff57e4"><div class="ttname"><a href="structTurbChoice.html#a61ff7dc6ee4001ae8f2978efd5ff57e4">TurbChoice::Ck</a></div><div class="ttdeci">amrex::Real Ck</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:191</div></div>
-<div class="ttc" id="astructTurbChoice_html_aa75682bb872d7917ffb8fddb21532f40"><div class="ttname"><a href="structTurbChoice.html#aa75682bb872d7917ffb8fddb21532f40">TurbChoice::Cs</a></div><div class="ttdeci">amrex::Real Cs</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:177</div></div>
-<div class="ttc" id="astructTurbChoice_html_aa90aa6c577f632a8c4582a3538d98ad5"><div class="ttname"><a href="structTurbChoice.html#aa90aa6c577f632a8c4582a3538d98ad5">TurbChoice::Pr_t_inv</a></div><div class="ttdeci">amrex::Real Pr_t_inv</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:182</div></div>
+<div class="ttc" id="astructTurbChoice_html_aa75682bb872d7917ffb8fddb21532f40"><div class="ttname"><a href="structTurbChoice.html#aa75682bb872d7917ffb8fddb21532f40">TurbChoice::Cs</a></div><div class="ttdeci">amrex::Real Cs</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:184</div></div>
+<div class="ttc" id="astructTurbChoice_html_aa90aa6c577f632a8c4582a3538d98ad5"><div class="ttname"><a href="structTurbChoice.html#aa90aa6c577f632a8c4582a3538d98ad5">TurbChoice::Pr_t_inv</a></div><div class="ttdeci">amrex::Real Pr_t_inv</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:177</div></div>
 <div class="ttc" id="astructTurbChoice_html_ab2d1ecb36171ca19ea851e8e682a1478"><div class="ttname"><a href="structTurbChoice.html#ab2d1ecb36171ca19ea851e8e682a1478">TurbChoice::Ce_wall</a></div><div class="ttdeci">amrex::Real Ce_wall</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:189</div></div>
 <div class="ttc" id="astructTurbChoice_html_ab6d0ae39e92dcbe7362abf53364c1a8e"><div class="ttname"><a href="structTurbChoice.html#ab6d0ae39e92dcbe7362abf53364c1a8e">TurbChoice::Ce</a></div><div class="ttdeci">amrex::Real Ce</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:188</div></div>
-<div class="ttc" id="astructTurbChoice_html_aeb3c184b540858407426a606327fba3a"><div class="ttname"><a href="structTurbChoice.html#aeb3c184b540858407426a606327fba3a">TurbChoice::theta_ref</a></div><div class="ttdeci">amrex::Real theta_ref</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:195</div></div>
+<div class="ttc" id="astructTurbChoice_html_aeb3c184b540858407426a606327fba3a"><div class="ttname"><a href="structTurbChoice.html#aeb3c184b540858407426a606327fba3a">TurbChoice::theta_ref</a></div><div class="ttdeci">amrex::Real theta_ref</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:196</div></div>
 </div><!-- fragment -->
 <p class="reference">Referenced by <a class="el" href="ERF__ComputeTurbulentViscosity_8cpp.html#a3865612b809df828f44e9c18218b1e37">ComputeTurbulentViscosity()</a>.</p>
 <div class="dynheader">

diff --git a/ERF__DiffusionSrcForState__N_8cpp.html b/ERF__DiffusionSrcForState__N_8cpp.html
@@ -1085,10 +1085,10 @@ <h2 class="memtitle"><span class="permalink"><a href="#a61d842d8a45b6d97948ce19b
 <div class="ttc" id="astructSolverChoice_html_a9ac649bbebc73403e291d2af180d4061"><div class="ttname"><a href="structSolverChoice.html#a9ac649bbebc73403e291d2af180d4061">SolverChoice::RhoQv_comp</a></div><div class="ttdeci">int RhoQv_comp</div><div class="ttdef"><b>Definition:</b> ERF_DataStruct.H:689</div></div>
 <div class="ttc" id="astructSolverChoice_html_aa53b017d79e0067923180a0aa59367b4"><div class="ttname"><a href="structSolverChoice.html#aa53b017d79e0067923180a0aa59367b4">SolverChoice::turbChoice</a></div><div class="ttdeci">amrex::Vector&lt; TurbChoice &gt; turbChoice</div><div class="ttdef"><b>Definition:</b> ERF_DataStruct.H:590</div></div>
 <div class="ttc" id="astructTurbChoice_html"><div class="ttname"><a href="structTurbChoice.html">TurbChoice</a></div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:31</div></div>
-<div class="ttc" id="astructTurbChoice_html_a11fd9429567c4dd4afa871170580aed0"><div class="ttname"><a href="structTurbChoice.html#a11fd9429567c4dd4afa871170580aed0">TurbChoice::pbl_mynn</a></div><div class="ttdeci">MYNNLevel25 pbl_mynn</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:203</div></div>
-<div class="ttc" id="astructTurbChoice_html_a15b9bb58cde72bab3f5714934125f3f9"><div class="ttname"><a href="structTurbChoice.html#a15b9bb58cde72bab3f5714934125f3f9">TurbChoice::pbl_type</a></div><div class="ttdeci">PBLType pbl_type</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:201</div></div>
-<div class="ttc" id="astructTurbChoice_html_abbba68e0d699dd97701d31a0e37d5304"><div class="ttname"><a href="structTurbChoice.html#abbba68e0d699dd97701d31a0e37d5304">TurbChoice::les_type</a></div><div class="ttdeci">LESType les_type</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:175</div></div>
-<div class="ttc" id="astructTurbChoice_html_aeb3c184b540858407426a606327fba3a"><div class="ttname"><a href="structTurbChoice.html#aeb3c184b540858407426a606327fba3a">TurbChoice::theta_ref</a></div><div class="ttdeci">amrex::Real theta_ref</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:195</div></div>
+<div class="ttc" id="astructTurbChoice_html_a11fd9429567c4dd4afa871170580aed0"><div class="ttname"><a href="structTurbChoice.html#a11fd9429567c4dd4afa871170580aed0">TurbChoice::pbl_mynn</a></div><div class="ttdeci">MYNNLevel25 pbl_mynn</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:204</div></div>
+<div class="ttc" id="astructTurbChoice_html_a15b9bb58cde72bab3f5714934125f3f9"><div class="ttname"><a href="structTurbChoice.html#a15b9bb58cde72bab3f5714934125f3f9">TurbChoice::pbl_type</a></div><div class="ttdeci">PBLType pbl_type</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:202</div></div>
+<div class="ttc" id="astructTurbChoice_html_abbba68e0d699dd97701d31a0e37d5304"><div class="ttname"><a href="structTurbChoice.html#abbba68e0d699dd97701d31a0e37d5304">TurbChoice::les_type</a></div><div class="ttdeci">LESType les_type</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:173</div></div>
+<div class="ttc" id="astructTurbChoice_html_aeb3c184b540858407426a606327fba3a"><div class="ttname"><a href="structTurbChoice.html#aeb3c184b540858407426a606327fba3a">TurbChoice::theta_ref</a></div><div class="ttdeci">amrex::Real theta_ref</div><div class="ttdef"><b>Definition:</b> ERF_TurbStruct.H:196</div></div>
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