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erf-model · Oct 8, 2024 · c007c46 · c007c46
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diff --git a/ERF_8H_source.html b/ERF_8H_source.html
@@ -1444,7 +1444,7 @@
 <div class="ttc" id="aclassERF_html_a15db5266359edba700f523f16da303a7"><div class="ttname"><a href="classERF.html#a15db5266359edba700f523f16da303a7">ERF::dz_min</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Real &gt; dz_min</div><div class="ttdef"><b>Definition:</b> ERF.H:1061</div></div>
 <div class="ttc" id="aclassERF_html_a16e1f6b8bbb05ae738daf2abe626c159"><div class="ttname"><a href="classERF.html#a16e1f6b8bbb05ae738daf2abe626c159">ERF::DataLogName</a></div><div class="ttdeci">std::string DataLogName(int i) const noexcept</div><div class="ttdoc">The filename of the ith datalog file.</div><div class="ttdef"><b>Definition:</b> ERF.H:1263</div></div>
 <div class="ttc" id="aclassERF_html_a16e49fd65c68e2afc2140bd9e97bcbe9"><div class="ttname"><a href="classERF.html#a16e49fd65c68e2afc2140bd9e97bcbe9">ERF::WriteGenericPlotfileHeaderWithTerrain</a></div><div class="ttdeci">void WriteGenericPlotfileHeaderWithTerrain(std::ostream &amp;HeaderFile, int nlevels, const amrex::Vector&lt; amrex::BoxArray &gt; &amp;bArray, const amrex::Vector&lt; std::string &gt; &amp;varnames, amrex::Real time, const amrex::Vector&lt; int &gt; &amp;level_steps, const std::string &amp;versionName, const std::string &amp;levelPrefix, const std::string &amp;mfPrefix) const</div><div class="ttdef"><b>Definition:</b> ERF_Plotfile.cpp:1586</div></div>
-<div class="ttc" id="aclassERF_html_a18610f7aac948db169cf8a4642573027"><div class="ttname"><a href="classERF.html#a18610f7aac948db169cf8a4642573027">ERF::remake_zphys</a></div><div class="ttdeci">void remake_zphys(int lev, std::unique_ptr&lt; amrex::MultiFab &gt; &amp;temp_zphys_nd)</div><div class="ttdef"><b>Definition:</b> ERF_make_new_arrays.cpp:492</div></div>
+<div class="ttc" id="aclassERF_html_a18610f7aac948db169cf8a4642573027"><div class="ttname"><a href="classERF.html#a18610f7aac948db169cf8a4642573027">ERF::remake_zphys</a></div><div class="ttdeci">void remake_zphys(int lev, std::unique_ptr&lt; amrex::MultiFab &gt; &amp;temp_zphys_nd)</div><div class="ttdef"><b>Definition:</b> ERF_make_new_arrays.cpp:479</div></div>
 <div class="ttc" id="aclassERF_html_a18c1142552120bbd22987f34995ee939"><div class="ttname"><a href="classERF.html#a18c1142552120bbd22987f34995ee939">ERF::thin_yforce</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; thin_yforce</div><div class="ttdef"><b>Definition:</b> ERF.H:824</div></div>
 <div class="ttc" id="aclassERF_html_a18e6dbbf968b4492e78aa427791620f4"><div class="ttname"><a href="classERF.html#a18e6dbbf968b4492e78aa427791620f4">ERF::ErrorEst</a></div><div class="ttdeci">void ErrorEst(int lev, amrex::TagBoxArray &amp;tags, amrex::Real time, int ngrow) override</div><div class="ttdef"><b>Definition:</b> ERF_Tagging.cpp:15</div></div>
 <div class="ttc" id="aclassERF_html_a18fa84b06132715757d97ec38678aa2c"><div class="ttname"><a href="classERF.html#a18fa84b06132715757d97ec38678aa2c">ERF::plot_file_2</a></div><div class="ttdeci">std::string plot_file_2</div><div class="ttdef"><b>Definition:</b> ERF.H:860</div></div>
@@ -1530,7 +1530,7 @@
 <div class="ttc" id="aclassERF_html_a54e37988486ef96e55e84bd8e91bb688"><div class="ttname"><a href="classERF.html#a54e37988486ef96e55e84bd8e91bb688">ERF::rV_new</a></div><div class="ttdeci">amrex::Vector&lt; amrex::MultiFab &gt; rV_new</div><div class="ttdef"><b>Definition:</b> ERF.H:696</div></div>
 <div class="ttc" id="aclassERF_html_a54f6c5d799e51521ad10bb57d29d0c44"><div class="ttname"><a href="classERF.html#a54f6c5d799e51521ad10bb57d29d0c44">ERF::PlotFileName</a></div><div class="ttdeci">std::string PlotFileName(int lev) const</div></div>
 <div class="ttc" id="aclassERF_html_a55eae94c5363e227b571739738bb26b7"><div class="ttname"><a href="classERF.html#a55eae94c5363e227b571739738bb26b7">ERF::write_1D_profiles</a></div><div class="ttdeci">void write_1D_profiles(amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ERF_Write1DProfiles.cpp:15</div></div>
-<div class="ttc" id="aclassERF_html_a5600f8ce250d4811012719fdf5e85f00"><div class="ttname"><a href="classERF.html#a5600f8ce250d4811012719fdf5e85f00">ERF::initialize_integrator</a></div><div class="ttdeci">void initialize_integrator(int lev, amrex::MultiFab &amp;cons_mf, amrex::MultiFab &amp;vel_mf)</div><div class="ttdef"><b>Definition:</b> ERF_make_new_arrays.cpp:529</div></div>
+<div class="ttc" id="aclassERF_html_a5600f8ce250d4811012719fdf5e85f00"><div class="ttname"><a href="classERF.html#a5600f8ce250d4811012719fdf5e85f00">ERF::initialize_integrator</a></div><div class="ttdeci">void initialize_integrator(int lev, amrex::MultiFab &amp;cons_mf, amrex::MultiFab &amp;vel_mf)</div><div class="ttdef"><b>Definition:</b> ERF_make_new_arrays.cpp:516</div></div>
 <div class="ttc" id="aclassERF_html_a56a23d298bc66218bf257d0e793e341f"><div class="ttname"><a href="classERF.html#a56a23d298bc66218bf257d0e793e341f">ERF::thin_zforce</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; thin_zforce</div><div class="ttdef"><b>Definition:</b> ERF.H:825</div></div>
 <div class="ttc" id="aclassERF_html_a574521986a6e403159f83c8b8123ba90"><div class="ttname"><a href="classERF.html#a574521986a6e403159f83c8b8123ba90">ERF::domain_bcs_type</a></div><div class="ttdeci">amrex::Vector&lt; amrex::BCRec &gt; domain_bcs_type</div><div class="ttdef"><b>Definition:</b> ERF.H:801</div></div>
 <div class="ttc" id="aclassERF_html_a57580311d47c9fd5e27ba156d287c169"><div class="ttname"><a href="classERF.html#a57580311d47c9fd5e27ba156d287c169">ERF::get_projection_bc</a></div><div class="ttdeci">amrex::Array&lt; amrex::LinOpBCType, AMREX_SPACEDIM &gt; get_projection_bc(amrex::Orientation::Side side) const noexcept</div><div class="ttdef"><b>Definition:</b> ERF_PoissonSolve.cpp:19</div></div>
@@ -1575,7 +1575,7 @@
 <div class="ttc" id="aclassERF_html_a7c448670f7a5cadd6fe56f7e615c9eb6"><div class="ttname"><a href="classERF.html#a7c448670f7a5cadd6fe56f7e615c9eb6">ERF::output_bndry_planes</a></div><div class="ttdeci">static int output_bndry_planes</div><div class="ttdef"><b>Definition:</b> ERF.H:984</div></div>
 <div class="ttc" id="aclassERF_html_a7d245afb7b3236b5967902f50bf9000b"><div class="ttname"><a href="classERF.html#a7d245afb7b3236b5967902f50bf9000b">ERF::d_v_geos</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Gpu::DeviceVector&lt; amrex::Real &gt; &gt; d_v_geos</div><div class="ttdef"><b>Definition:</b> ERF.H:1009</div></div>
 <div class="ttc" id="aclassERF_html_a7d54d3f2317d06a8dfcde4f65cfc3e92"><div class="ttname"><a href="classERF.html#a7d54d3f2317d06a8dfcde4f65cfc3e92">ERF::last_plot_file_step_1</a></div><div class="ttdeci">int last_plot_file_step_1</div><div class="ttdef"><b>Definition:</b> ERF.H:827</div></div>
-<div class="ttc" id="aclassERF_html_a7dba7f9e6bd3f6898fac9ac2efcec692"><div class="ttname"><a href="classERF.html#a7dba7f9e6bd3f6898fac9ac2efcec692">ERF::update_terrain_arrays</a></div><div class="ttdeci">void update_terrain_arrays(int lev)</div><div class="ttdef"><b>Definition:</b> ERF_make_new_arrays.cpp:519</div></div>
+<div class="ttc" id="aclassERF_html_a7dba7f9e6bd3f6898fac9ac2efcec692"><div class="ttname"><a href="classERF.html#a7dba7f9e6bd3f6898fac9ac2efcec692">ERF::update_terrain_arrays</a></div><div class="ttdeci">void update_terrain_arrays(int lev)</div><div class="ttdef"><b>Definition:</b> ERF_make_new_arrays.cpp:506</div></div>
 <div class="ttc" id="aclassERF_html_a7e9040f32464f1a6dee6e0384393451d"><div class="ttname"><a href="classERF.html#a7e9040f32464f1a6dee6e0384393451d">ERF::nc_bdy_file</a></div><div class="ttdeci">static std::string nc_bdy_file</div><div class="ttdef"><b>Definition:</b> ERF.H:967</div></div>
 <div class="ttc" id="aclassERF_html_a7ef14f6028b577eba70aef46b508be19"><div class="ttname"><a href="classERF.html#a7ef14f6028b577eba70aef46b508be19">ERF::nc_init_file</a></div><div class="ttdeci">static amrex::Vector&lt; amrex::Vector&lt; std::string &gt; &gt; nc_init_file</div><div class="ttdef"><b>Definition:</b> ERF.H:964</div></div>
 <div class="ttc" id="aclassERF_html_a80981e20939a6a38ba17478da2253ff1"><div class="ttname"><a href="classERF.html#a80981e20939a6a38ba17478da2253ff1">ERF::init_only</a></div><div class="ttdeci">void init_only(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1270</div></div>
@@ -1665,7 +1665,7 @@
 <div class="ttc" id="aclassERF_html_ac44e400a7ce68e18fa44e9416cb1344e"><div class="ttname"><a href="classERF.html#ac44e400a7ce68e18fa44e9416cb1344e">ERF::ClearLevel</a></div><div class="ttdeci">void ClearLevel(int lev) override</div><div class="ttdef"><b>Definition:</b> ERF_make_new_level.cpp:434</div></div>
 <div class="ttc" id="aclassERF_html_ac7d54bdbad555db77b5065ca48ec7679"><div class="ttname"><a href="classERF.html#ac7d54bdbad555db77b5065ca48ec7679">ERF::use_heffte</a></div><div class="ttdeci">static bool use_heffte</div><div class="ttdef"><b>Definition:</b> ERF.H:943</div></div>
 <div class="ttc" id="aclassERF_html_ac81b3dfd7c6f21ba8479834e2ff1e652"><div class="ttname"><a href="classERF.html#ac81b3dfd7c6f21ba8479834e2ff1e652">ERF::ref_tags</a></div><div class="ttdeci">static amrex::Vector&lt; amrex::AMRErrorTag &gt; ref_tags</div><div class="ttdef"><b>Definition:</b> ERF.H:1053</div></div>
-<div class="ttc" id="aclassERF_html_ac81ec7f74a1be1c4a1e6e15e08385ed5"><div class="ttname"><a href="classERF.html#ac81ec7f74a1be1c4a1e6e15e08385ed5">ERF::make_physbcs</a></div><div class="ttdeci">void make_physbcs(int lev)</div><div class="ttdef"><b>Definition:</b> ERF_make_new_arrays.cpp:551</div></div>
+<div class="ttc" id="aclassERF_html_ac81ec7f74a1be1c4a1e6e15e08385ed5"><div class="ttname"><a href="classERF.html#ac81ec7f74a1be1c4a1e6e15e08385ed5">ERF::make_physbcs</a></div><div class="ttdeci">void make_physbcs(int lev)</div><div class="ttdef"><b>Definition:</b> ERF_make_new_arrays.cpp:538</div></div>
 <div class="ttc" id="aclassERF_html_ac94ddee2f501dbcea2a516284b7119b5"><div class="ttname"><a href="classERF.html#ac94ddee2f501dbcea2a516284b7119b5">ERF::d_w_subsid</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Gpu::DeviceVector&lt; amrex::Real &gt; &gt; d_w_subsid</div><div class="ttdef"><b>Definition:</b> ERF.H:1003</div></div>
 <div class="ttc" id="aclassERF_html_ac9a11403c2238d0d1e7b65b2d100dbaf"><div class="ttname"><a href="classERF.html#ac9a11403c2238d0d1e7b65b2d100dbaf">ERF::FPr_w</a></div><div class="ttdeci">amrex::Vector&lt; ERFFillPatcher &gt; FPr_w</div><div class="ttdef"><b>Definition:</b> ERF.H:737</div></div>
 <div class="ttc" id="aclassERF_html_acab120bb9324e7298534d765c447d703"><div class="ttname"><a href="classERF.html#acab120bb9324e7298534d765c447d703">ERF::real_set_width</a></div><div class="ttdeci">int real_set_width</div><div class="ttdef"><b>Definition:</b> ERF.H:969</div></div>