CPTAC Assay Portal

CPTAC ASSAY Portal is a php webapp.

• found that php-curl extention is required
• uses .htaccess to redirect and set global php variables
• must set directory AllowOverride to All in apache virtual host file to enable .htaccess behavior

./core directory includes the Slim and Twig frameworks used in this project.

./swpg_global_settings.php includes db connection properties.

Assay Import Module:

• uses curl calls to parse html in json object for data of interest.

URLs

• Production: https://assays.cancer.gov/
• Development: https://assaysdev.cancer.gov/
• Staging: https://cptac.cancer.gov/

Data Sources

• Panorama: https://daily.panoramaweb.org/

• UniProt: http://www.uniprot.org/

• Entrez Gene: http://www.ncbi.nlm.nih.gov/gene

• PhoshphoSitePro: http://www.phosphosite.org/

Administrative Interfaces

Production

• Application: https://assays.cancer.gov/authenticate/

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