Update tool HESS to 0.0.2+galaxy0

tools/hess/Image.py

@@ -0,0 +1,252 @@
+#!/usr/bin/env python
+# coding: utf-8
+
+# In[ ]:
+
+
+import json
+import os
+import shutil
+import sys
+
+try:
+    import numpy as np
+    _numpy_available = True
+except ImportError:
+    _numpy_available = False
+
+try:
+    from oda_api.json import CustomJSONEncoder
+except ImportError:
+    from json import JSONEncoder as CustomJSONEncoder
+
+_galaxy_wd = os.getcwd()
+
+
+# In[1]:
+
+
+import astropy.units as u
+from astropy.coordinates import SkyCoord
+
+import matplotlib.pyplot as plt
+from gammapy.data import DataStore
+from gammapy.makers import MapDatasetMaker
+from gammapy.makers.utils import make_theta_squared_table
+from gammapy.maps import Map, MapAxis, WcsGeom
+from astropy.io import fits
+import numpy as np
+from numpy import pi,cos,sin,sqrt
+import os
+from astropy import wcs
+from astropy.io import fits
+from oda_api.data_products import PictureProduct
+from oda_api.data_products import ImageDataProduct
+from astropy.time import Time
+
+
+# In[2]:
+
+
+if(os.path.exists('hess_dl3_dr1.tar.gz')==False):
+    get_ipython().system('wget https://zenodo.org/record/1421099/files/hess_dl3_dr1.tar.gz')
+    get_ipython().system('tar -zxvf hess_dl3_dr1.tar.gz')
+
+
+# In[3]:
+
+
+src_name='Crab' #http://odahub.io/ontology#AstrophysicalObject
+RA=83.628700  # http://odahub.io/ontology#PointOfInterestRA
+DEC = 22.014700 # http://odahub.io/ontology#PointOfInterestDEC
+T1='2000-10-09T13:16:00.0'# http://odahub.io/ontology#StartTime
+T2='2022-10-10T13:16:00.0' # http://odahub.io/ontology#EndTime
+Radius=2.5  #http://odahub.io/ontology#AngleDegrees
+pixsize=0.1 #http://odahub.io/ontology#AngleDegrees
+Emin=100.    #http://odahub.io/ontology#Energy_GeV
+Emax=10000. #http://odahub.io/ontology#Energy_GeV
+
+
+# In[ ]:
+
+
+with open('inputs.json', 'r') as fd:
+    inp_dic = json.load(fd)
+if '_data_product' in inp_dic.keys():
+    inp_pdic = inp_dic['_data_product']
+else:
+    inp_pdic = inp_dic
+
+for vn, vv in inp_pdic.items():
+    if vn != '_selector':
+        globals()[vn] = type(globals()[vn])(vv)
+
+
+# In[4]:
+
+
+T1=Time(T1, format='isot', scale='utc').mjd
+T2=Time(T2, format='isot', scale='utc').mjd
+message=''
+RA_pnts=[]
+DEC_pnts=[]
+DL3_files=[]
+OBSIDs=[]
+Tstart=[]
+Tstop=[]
+flist=os.listdir('data')
+for f in flist:
+    if(f[-7:]=='fits.gz'):
+        DL3_files.append(f)
+        OBSIDs.append(int(f[20:26]))
+        hdul=fits.open('data/'+f)
+        RA_pnts.append(float(hdul[1].header['RA_PNT']))
+        DEC_pnts.append(float(hdul[1].header['DEC_PNT']))   
+        Tstart.append(Time(hdul[1].header['DATE-OBS']+'T'+hdul[1].header['TIME-OBS'], format='isot', scale='utc').mjd)
+        Tstop.append(Time(hdul[1].header['DATE-END']+'T'+hdul[1].header['TIME-END'], format='isot', scale='utc').mjd)
+        hdul.close()
+
+
+# In[5]:
+
+
+Coords_s=SkyCoord(RA,DEC,unit='degree')
+COORDS_pnts=SkyCoord(RA_pnts,DEC_pnts,unit='degree')
+seps=COORDS_pnts.separation(Coords_s).deg
+
+
+# In[6]:
+
+
+mask=np.where((seps<Radius) & (Tstart>T1) & (Tstop<T2))[0]
+OBSlist=[]
+for i in mask:
+    OBSlist.append(DL3_files[i])
+if(len(OBSlist)==0):
+    message='No data found'
+    raise RuntimeError('No data found')
+message
+
+
+# In[8]:
+
+
+cdec=cos(DEC*pi/180.)
+Npix=int(4*Radius/pixsize)+1
+RA_bins=np.linspace(RA-Radius/cdec,RA+Radius/cdec,Npix+1)
+DEC_bins=np.linspace(DEC-Radius,DEC+Radius,Npix+1)
+image=np.zeros((Npix,Npix))
+for f in OBSlist:
+    hdul=fits.open('data/'+f)
+    ev=hdul['EVENTS'].data
+    ev_ra=ev['RA']
+    ev_dec=ev['DEC']
+    ev_en=ev['ENERGY']
+    ev_time=ev['TIME']    
+    h=np.histogram2d(ev_ra,ev_dec,bins=[RA_bins,DEC_bins])
+    image+=h[0]
+    hdul.close()
+
+plt.imshow(np.flip(image,axis=1),extent=(RA_bins[-1],RA_bins[0],DEC_bins[0],DEC_bins[-1]),origin='lower')
+plt.colorbar()
+
+plt.xlabel('RA, degrees')
+plt.ylabel('DEC,degrees')
+plt.savefig('Image.png',format='png')
+
+
+# In[9]:
+
+
+# Create a new WCS object.  The number of axes must be set
+# from the start
+w = wcs.WCS(naxis=2)
+
+# Set up an "Airy's zenithal" projection
+# Vector properties may be set with Python lists, or Numpy arrays
+w.wcs.crpix = [Npix/2., Npix/2.]
+w.wcs.cdelt = np.array([pixsize/cdec, pixsize])
+w.wcs.crval = [RA, DEC]
+w.wcs.ctype = ["RA---AIR", "DEC--AIR"]
+w.wcs.set_pv([(2, 1, 45.0)])
+
+# Now, write out the WCS object as a FITS header
+header = w.to_header()
+
+# header is an astropy.io.fits.Header object.  We can use it to create a new
+# PrimaryHDU and write it to a file.
+hdu = fits.PrimaryHDU(image,header=header)
+hdu.writeto('Image.fits',overwrite=True)
+hdu=fits.open('Image.fits')
+im=hdu[0].data
+from astropy.wcs import WCS
+wcs = WCS(hdu[0].header)
+plt.subplot(projection=wcs)
+plt.imshow(im,  origin='lower')
+plt.grid(color='white', ls='solid')
+plt.xlabel('RA')
+plt.ylabel('Dec')
+
+
+# In[10]:
+
+
+bin_image = PictureProduct.from_file('Image.png')
+fits_image=ImageDataProduct.from_fits_file('Image.fits')
+
+
+# In[11]:
+
+
+picture = bin_image # http://odahub.io/ontology#ODAPictureProduct
+image = fits_image # http://odahub.io/ontology#Image
+
+
+# In[ ]:
+
+
+
+
+
+# In[ ]:
+
+
+_simple_outs, _oda_outs = [], []
+_galaxy_meta_data = {}
+_oda_outs.append(('out_Image_picture', 'picture_galaxy.output', picture))
+_oda_outs.append(('out_Image_image', 'image_galaxy.output', image))
+
+for _outn, _outfn, _outv in _oda_outs:
+    _galaxy_outfile_name = os.path.join(_galaxy_wd, _outfn)
+    if isinstance(_outv, str) and os.path.isfile(_outv):
+        shutil.move(_outv, _galaxy_outfile_name)
+        _galaxy_meta_data[_outn] = {'ext': '_sniff_'}
+    elif getattr(_outv, "write_fits_file", None):
+        _outv.write_fits_file(_galaxy_outfile_name)
+        _galaxy_meta_data[_outn] = {'ext': 'fits'}
+    elif getattr(_outv, "write_file", None):
+        _outv.write_file(_galaxy_outfile_name)
+        _galaxy_meta_data[_outn] = {'ext': '_sniff_'}
+    else:
+        with open(_galaxy_outfile_name, 'w') as fd:
+            json.dump(_outv, fd, cls=CustomJSONEncoder)
+        _galaxy_meta_data[_outn] = {'ext': 'json'}
+
+for _outn, _outfn, _outv in _simple_outs:
+    _galaxy_outfile_name = os.path.join(_galaxy_wd, _outfn)
+    if isinstance(_outv, str) and os.path.isfile(_outv):
+        shutil.move(_outv, _galaxy_outfile_name)
+        _galaxy_meta_data[_outn] = {'ext': '_sniff_'}
+    elif _numpy_available and isinstance(_outv, np.ndarray):
+        with open(_galaxy_outfile_name, 'wb') as fd:
+            np.savez(fd, _outv)
+        _galaxy_meta_data[_outn] = {'ext': 'npz'}
+    else:
+        with open(_galaxy_outfile_name, 'w') as fd:
+            json.dump(_outv, fd)
+        _galaxy_meta_data[_outn] = {'ext': 'expression.json'}
+
+with open(os.path.join(_galaxy_wd, 'galaxy.json'), 'w') as fd:
+    json.dump(_galaxy_meta_data, fd)
+print("*** Job finished successfully ***")
+