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rhiju authored Aug 9, 2024
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# OpenKnotScore
Scripts and examples for scoring pseudoknot designs based on chemical mapping data.
# OpenKnotScoreMATLAB
Original scripts and examples (MATLAB) for scoring pseudoknot designs based on chemical mapping data.

Developed for the Eterna project's [OpenKnot challenge](https://eternagame.org/challenges/11843006) by R. Das.

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Make sure to also install the `RDATkit` MATLAB tools – see the [RDATKit repository](https://github.com/ribokit/RDATKit) and instructions [here](https://ribokit.github.io/RDATKit/).

For this OpenKnotScore repository, use the Set Path command in MATLAB to include the `OpenKnotScore/matlab/` directory and all subdirectories in your MATLAB path.
For this OpenKnotScore repository, use the Set Path command in MATLAB to include the `OpenKnotScoreMATLAB/matlab/` directory and all subdirectories in your MATLAB path.

Then let's go into the example directory:

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