Metadata Upload #813
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| name: Metadata Upload | |
| on: | |
| # scheduled submission every day at 13.00, 19.00 and 24.00 CET | |
| schedule: | |
| - cron: '00 12,18,23 * * *' | |
| # needed to trigger manually | |
| workflow_dispatch: | |
| jobs: | |
| scheduled-submit: | |
| if: github.repository_owner == 'european-modelling-hubs' | |
| runs-on: ubuntu-latest | |
| steps: | |
| # Checkout the python tools repo | |
| # used to authenticate and validate the PR | |
| # ------------------------------------------- | |
| - name: checkout python tools repo | |
| uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| repository: 'european-modelling-hubs/hub-tools' | |
| ref: 'main' | |
| path: tools | |
| # Checkout the data repo | |
| - name: checkout data repo | |
| uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| repository: 'european-modelling-hubs/flu-forecast-hub' | |
| ref: 'main' | |
| path: './repo/' | |
| # Get the list of changes from a json file | |
| - name: Get changes list | |
| id: get_changes | |
| run: | | |
| echo "Read changes list from json" | |
| content=`cat ./repo/.github/data-storage/metadata_db.json` | |
| content="${content//'%'/'%25'}" | |
| content="${content//$'\n'/'%0A'}" | |
| content="${content//$'\r'/'%0D'}" | |
| echo "::set-output name=packageJson::$content" | |
| - run: | | |
| echo "${{ steps.get_changes.outputs.packageJson }}" | |
| # Trigger server-side updating and UI deploy | |
| # -------------------------------------------- | |
| # WEBHOOK | |
| - name: Invoke deployment hook | |
| id: invoke_webhook | |
| env: | |
| disease_name: ${{ vars.DISEASE_NAME }} | |
| webhook_url: ${{ secrets.WEB_HOOK_URL }} | |
| webhook_secret: ${{ secrets.WEB_HOOK_SECRET }} | |
| data: ${{ steps.get_changes.outputs.packageJson }} | |
| data_type: "metadata" | |
| run: | | |
| pip install requests | |
| python ./tools/code/ws_webhook.py | |
| - name: trace only | |
| run: | | |
| echo "webhook results: ${{ steps.invoke_webhook.outputs.run_results }}" | |
| # SUCCESSFUL RUN | |
| # -------------------------------------------- | |
| - name: Successful run | |
| if: ${{ fromJSON(steps.invoke_webhook.outputs.run_results).status == 'success'}} | |
| env: | |
| wh_response: ${{ steps.invoke_webhook.outputs.run_results }} | |
| run: | | |
| echo "UPLOAD SUCCEEDED - clear djson db" | |
| python ./tools/code/clear_data_storage.py --storage_type "model-metadata" | |
| # RUN FAILURE | |
| # -------------------------------------------- | |
| - name: Some ingestion failed | |
| if: ${{ fromJSON(steps.invoke_webhook.outputs.run_results).status == 'failure'}} | |
| env: | |
| wh_response: ${{ steps.invoke_webhook.outputs.run_results }} | |
| run: | | |
| echo "UPLOAD FAILED - Some ingestion failed" | |
| python ./tools/code/clear_data_storage.py --storage_type "model-metadata" | |
| # ERROR RUN | |
| # -------------------------------------------- | |
| - name: Error | |
| if: ${{ steps.invoke_webhook.outputs.run_results.status == 'error'}} | |
| run: | | |
| echo "UPLOAD FAILED - ignore djson db cleaning" | |
| exit 1 | |
| # Final commit | |
| # -------------------------------------------- | |
| - name: Commit changes | |
| if: ${{ fromJSON(steps.invoke_webhook.outputs.run_results).status == 'failure' || fromJSON(steps.invoke_webhook.outputs.run_results).status == 'success' }} | |
| uses: EndBug/add-and-commit@v7 | |
| with: | |
| cwd: './repo' | |
| message: "Update metadata db json" | |
| default_author: github_actions | |
| push: true |