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Merge pull request #664 from evalf/unittests
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joostvanzwieten authored Dec 29, 2021
2 parents 48a0348 + 45a5141 commit 6b3f450
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116 changes: 65 additions & 51 deletions .github/workflows/test.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -33,35 +33,30 @@ jobs:
if-no-files-found: error
test:
needs: build-python-package
name: 'Test os: ${{ matrix.os }}, py: ${{ matrix.python-version }}, matrix: ${{ matrix.matrix-backend }}, nprocs: ${{ matrix.nprocs }}, numpy: ${{ matrix.numpy-version }}, tensorial: ${{ matrix.tensorial }}'
name: 'Test ${{ matrix.name }}'
runs-on: ${{ matrix.os }}
strategy:
matrix:
include:
# base
- {os: ubuntu-latest , python-version: 3.9, matrix-backend: numpy, nprocs: 1, numpy-version: latest}
# os
- {os: windows-latest, python-version: 3.9, matrix-backend: numpy, nprocs: 1, numpy-version: latest}
- {os: macos-latest , python-version: 3.9, matrix-backend: numpy, nprocs: 1, numpy-version: latest}
# python-version
- {os: ubuntu-latest , python-version: 3.5, matrix-backend: numpy, nprocs: 1, numpy-version: latest}
- {os: ubuntu-latest , python-version: 3.6, matrix-backend: numpy, nprocs: 1, numpy-version: latest}
- {os: ubuntu-latest , python-version: 3.7, matrix-backend: numpy, nprocs: 1, numpy-version: latest}
- {os: ubuntu-latest , python-version: 3.8, matrix-backend: numpy, nprocs: 1, numpy-version: latest}
# matrix-backend
- {os: ubuntu-latest , python-version: 3.9, matrix-backend: scipy, nprocs: 1, numpy-version: latest}
- {os: ubuntu-latest , python-version: 3.9, matrix-backend: mkl , nprocs: 1, numpy-version: latest}
- {os: ubuntu-latest , python-version: 3.9, matrix-backend: mkl , nprocs: 2, numpy-version: latest}
# nprocs
- {os: ubuntu-latest , python-version: 3.9, matrix-backend: numpy, nprocs: 2, numpy-version: latest}
# numpy-version
- {os: ubuntu-latest , python-version: 3.6, matrix-backend: numpy, nprocs: 1, numpy-version: 1.17 }
# tensorial
- {os: ubuntu-latest , python-version: 3.9, matrix-backend: numpy, nprocs: 1, numpy-version: latest, tensorial: test}
- {name: "baseline", os: ubuntu-latest, python-version: "3.10", matrix-backend: numpy, nprocs: 1}
- {name: "windows", os: windows-latest, python-version: "3.10", matrix-backend: numpy, nprocs: 1}
- {name: "macos", os: macos-latest, python-version: "3.10", matrix-backend: numpy, nprocs: 1}
- {name: "python 3.5", os: ubuntu-latest, python-version: "3.5", matrix-backend: numpy, nprocs: 1}
- {name: "python 3.6", os: ubuntu-latest, python-version: "3.6", matrix-backend: numpy, nprocs: 1}
- {name: "python 3.7", os: ubuntu-latest, python-version: "3.7", matrix-backend: numpy, nprocs: 1}
- {name: "python 3.8", os: ubuntu-latest, python-version: "3.8", matrix-backend: numpy, nprocs: 1}
- {name: "python 3.9", os: ubuntu-latest, python-version: "3.9", matrix-backend: numpy, nprocs: 1}
- {name: "scipy matrix", os: ubuntu-latest, python-version: "3.10", matrix-backend: scipy, nprocs: 1}
- {name: "mkl matrix", os: ubuntu-latest, python-version: "3.10", matrix-backend: mkl, nprocs: 1}
- {name: "mkl matrix parallel", os: ubuntu-latest, python-version: "3.10", matrix-backend: mkl, nprocs: 2}
- {name: "parallel", os: ubuntu-latest, python-version: "3.10", matrix-backend: numpy, nprocs: 2}
- {name: "numpy 1.17", os: ubuntu-latest, python-version: "3.6", matrix-backend: numpy, nprocs: 1, numpy-version: ==1.17}
- {name: "tensorial", os: ubuntu-latest, python-version: "3.10", matrix-backend: numpy, nprocs: 1, tensorial: test}
fail-fast: false
env:
NUTILS_MATRIX: ${{ matrix.matrix-backend }}
NUTILS_NPROCS: ${{ matrix.nprocs }}
NUTILS_DEBUG: all
OMP_NUM_THREADS: 1
VECLIB_MAXIMUM_THREADS: 1
MKL_DYNAMIC: FALSE
Expand All @@ -71,6 +66,8 @@ jobs:
steps:
- name: Checkout
uses: actions/checkout@v2
- name: Move nutils directory
run: mv nutils _nutils
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v1
with:
Expand All @@ -86,45 +83,62 @@ jobs:
- name: Install Nutils and dependencies
id: install
env:
_os: ${{ matrix.os }}
_matrix: ${{ matrix.matrix-backend }}
_numpy: ${{ matrix.numpy-version }}
_numpy_version: ${{ matrix.numpy-version }}
run: |
_deps="coverage treelog stringly matplotlib pillow meshio"
case "$_os" in
windows-latest) _deps="$_deps psutil";;
esac
case "$_matrix" in
scipy) _deps="$_deps scipy";;
mkl) _deps="$_deps mkl";;
esac
case "$_numpy" in
latest) _deps="$_deps numpy Sphinx scipy";;
*) _deps="$_deps numpy==$_numpy";;
esac
python -um pip install --upgrade wheel
python -um pip install --upgrade $_deps
# Install Nutils from `dist` dir created in job
# `build-python-package`.
python -um pip install --upgrade coverage treelog stringly meshio numpy$_numpy_version
# Install Nutils from `dist` dir created in job `build-python-package`.
python -um pip install --no-index --find-links ./dist nutils
- name: Install Scipy
if: ${{ matrix.matrix-backend == 'scipy' }}
run: python -um pip install --upgrade scipy
- name: Configure MKL
id: configure-mkl
if: ${{ matrix.matrix-backend == 'mkl' }}
run: python -um devtools.gha.configure_mkl
- name: Test
env:
NUTILS_DEBUG: all
run: |
mkdir testenv
cp -r examples docs tests .coveragerc testenv
cd testenv
python -um coverage run -m unittest -bq
python -um pip install --upgrade mkl
python -um devtools.gha.configure_mkl
- name: Test
run: python -um coverage run -m unittest discover -b -q -t . -s tests
- name: Post-process coverage
run: |
mv testenv/.coverage .
python -um devtools.gha.coverage_report_xml
run: python -um devtools.gha.coverage_report_xml
- name: Upload coverage
uses: codecov/codecov-action@v1
test-examples:
needs: build-python-package
name: 'Test examples ${{ matrix.os }}'
runs-on: ${{ matrix.os }}-latest
strategy:
matrix:
os: [ubuntu, macos, windows]
fail-fast: false
env:
NUTILS_MATRIX: scipy
NUTILS_NPROCS: 1
NUTILS_DEBUG: all
OMP_NUM_THREADS: 1
VECLIB_MAXIMUM_THREADS: 1
PYTHONHASHSEED: 0
steps:
- name: Checkout
uses: actions/checkout@v2
- name: Move nutils directory
run: mv nutils _nutils
- name: Set up Python
uses: actions/setup-python@v1
- name: Download Python package artifact
uses: actions/download-artifact@v2
with:
name: python-package
path: dist/
- name: Install Nutils and dependencies
id: install
run: |
python -um pip install --upgrade wheel
python -um pip install --upgrade treelog stringly matplotlib scipy pillow numpy
# Install Nutils from `dist` dir created in job `build-python-package`.
python -um pip install --no-index --find-links ./dist nutils
- name: Test
run: python -um unittest discover -b -q -t . -s examples
test-sphinx:
name: Test building docs
runs-on: ubuntu-20.04
Expand Down
3 changes: 0 additions & 3 deletions examples/adaptivity.py
Original file line number Diff line number Diff line change
Expand Up @@ -96,7 +96,6 @@ def main(etype:str, btype:str, degree:int, nrefine:int):

class test(testing.TestCase):

@testing.requires('matplotlib')
def test_square_quadratic(self):
ndofs, error, lhs = main(nrefine=2, btype='h-std', etype='square', degree=2)
with self.subTest('degrees of freedom'):
Expand All @@ -112,7 +111,6 @@ def test_square_quadratic(self):
7AYLvMPpsqGkCTPumzWf+qV92kKevjK36ozDP/FSnh1iteWiqWuf+oMaKuyKaC1i52rKPokiF2WLA/20
bya+ZCPbWKRPpvgFaedebw==''')

@testing.requires('matplotlib')
def test_triangle_quadratic(self):
ndofs, error, lhs = main(nrefine=2, btype='h-std', etype='triangle', degree=2)
with self.subTest('degrees of freedom'):
Expand All @@ -126,7 +124,6 @@ def test_triangle_quadratic(self):
bQbyXYEiQWbKZjNM7wJVzjBlYICoPW8CMiXH+LXRR9NwoPkg82xN5IB2MZu2mGabSBnnAbGscYEJj3GV
YQAQg/TVGfaA7RI0BsErRjeNeowDgDQPmF9gkmciaJxtArGjzrAKCGWNpYAQAL0kOBE=''')

@testing.requires('matplotlib')
def test_mixed_linear(self):
ndofs, error, lhs = main(nrefine=2, btype='h-std', etype='mixed', degree=1)
with self.subTest('degrees of freedom'):
Expand Down
6 changes: 0 additions & 6 deletions examples/burgers.py
Original file line number Diff line number Diff line change
Expand Up @@ -75,39 +75,33 @@ def main(nelems:int, ndims:int, btype:str, degree:int, timescale:float, newtonto

class test(testing.TestCase):

@testing.requires('matplotlib')
def test_1d_p0(self):
lhs = main(ndims=1, nelems=10, timescale=.1, btype='discont', degree=0, endtime=.01, newtontol=1e-5)
self.assertAlmostEqual64(lhs, '''
eNrz1ttqGGOiZSZlrmbuZdZgcsEwUg8AOqwFug==''')

@testing.requires('matplotlib')
def test_1d_p1(self):
lhs = main(ndims=1, nelems=10, timescale=.1, btype='discont', degree=1, endtime=.01, newtontol=1e-5)
self.assertAlmostEqual64(lhs, '''
eNrbocann6u3yqjTyMLUwfSw2TWzKPNM8+9mH8wyTMNNZxptMirW49ffpwYAI6cOVA==''')

@testing.requires('matplotlib')
def test_1d_p2(self):
lhs = main(ndims=1, nelems=10, timescale=.1, btype='discont', degree=2, endtime=.01, newtontol=1e-5)
self.assertAlmostEqual64(lhs, '''
eNrr0c7SrtWfrD/d4JHRE6Ofxj6mnqaKZofNDpjZmQeYB5pHmL8we23mb5ZvWmjKY/LV6KPRFIMZ+o36
8dp92gCxZxZG''')

@testing.requires('matplotlib')
def test_1d_p1_legendre(self):
lhs = main(ndims=1, nelems=10, timescale=.1, btype='legendre', degree=1, endtime=.01, newtontol=1e-5)
self.assertAlmostEqual64(lhs, '''
eNrbpbtGt9VQyNDfxMdYzczERNZczdjYnOdsoNmc01kmE870Gj49t0c36BIAAhsO1g==''')

@testing.requires('matplotlib')
def test_1d_p2_legendre(self):
lhs = main(ndims=1, nelems=10, timescale=.1, btype='legendre', degree=2, endtime=.01, newtontol=1e-5)
self.assertAlmostEqual64(lhs, '''
eNoBPADD/8ot2y2/K4UxITFFLk00RTNNLyY2KzTTKx43QjOOzzM3Ss0pz1A2qsvhKGk0jsyXL48xzc5j
LswtIdLIK5SlF78=''')

@testing.requires('matplotlib')
def test_2d_p1(self):
lhs = main(ndims=2, nelems=4, timescale=.1, btype='discont', degree=1, endtime=.01, newtontol=1e-5)
import os
Expand Down
4 changes: 0 additions & 4 deletions examples/cahnhilliard.py
Original file line number Diff line number Diff line change
Expand Up @@ -113,7 +113,6 @@ def main(nelems:int, etype:str, btype:str, degree:int, epsilon:typing.Optional[f

class test(testing.TestCase):

@testing.requires('matplotlib')
def test_initial(self):
state = main(nelems=3, etype='square', btype='std', degree=2, epsilon=None, contactangle=90, timestep=1, mtol=float('inf'), seed=0, circle=False, stab=stab.linear)
with self.subTest('concentration'): self.assertAlmostEqual64(state['c'], '''
Expand All @@ -123,7 +122,6 @@ def test_initial(self):
eNoBYgCd/w7NQModNFjLtckB0VA0rDCiM+zKBMzPygjMcMr4yJcy0MsUyXY0OcoxMFo19zE5Np/JMDTG
yk7KGstQzFgwvMnDNXk0Msm+Njc3SjZizebJEjbPy1w25zLsNfQzSjURLRk3Qt4uBQ==''')

@testing.requires('matplotlib')
def test_square(self):
state = main(nelems=3, etype='square', btype='std', degree=2, epsilon=None, contactangle=90, timestep=1, mtol=.1, seed=0, circle=False, stab=stab.linear)
with self.subTest('concentration'): self.assertAlmostEqual64(state['c'], '''
Expand All @@ -133,7 +131,6 @@ def test_square(self):
eNpVyU0KgCAABeGrK9SiQCiQCsrwB8GjzLF8uJNvNYzBsuP5yGKmWlhxXKMSmxzchPGceF4iVU55+Ck0
masD28JDNQ==''')

@testing.requires('matplotlib')
def test_contactangle(self):
state = main(nelems=3, etype='square', btype='std', degree=2, epsilon=None, contactangle=45, timestep=1, mtol=.1, seed=0, circle=False, stab=stab.linear)
with self.subTest('concentration'): self.assertAlmostEqual64(state['c'], '''
Expand All @@ -143,7 +140,6 @@ def test_contactangle(self):
eNoNzCEOggAYgNFLvbPguILeQRpWgyQPoAYCuBGhWHVzGshOLegMSvffS1/5EqmF2sUnTKJylbO3l6mZ
pb2TZ5jLrDWObmGlUDroDWFjq43H3dcvaqdz9TCGP1tYLVU=''')

@testing.requires('matplotlib')
def test_mixedcircle(self):
state = main(nelems=3, etype='mixed', btype='std', degree=2, epsilon=None, contactangle=90, timestep=1, mtol=.1, seed=0, circle=True, stab=stab.linear)
with self.subTest('concentration'): self.assertAlmostEqual64(state['c'], '''
Expand Down
2 changes: 0 additions & 2 deletions examples/coil.py
Original file line number Diff line number Diff line change
Expand Up @@ -184,7 +184,6 @@ def main(nelems: int = 50, degree: int = 3, freq: float = 0., nturns: int = 1, r

class test(testing.TestCase):

@testing.requires('matplotlib')
def test_dc(self):
state = main(nelems=16, degree=2)
with self.subTest('A.real'): self.assertAlmostEqual64(state['A'].real, '''
Expand All @@ -197,7 +196,6 @@ def test_dc(self):
5JDUS01ILmEYOWzEJB/nKGep1y22j/AYD3AH3chjD6oRxRu+yDVcpN3U49K2wAV+xqP8kPu5i9u4jjfw
HI1Ta9ihya2zLdRCh+kg7adGqqMtlKZVFKNpN+JyboFL2f8Z6oV2''')

@testing.requires('matplotlib')
def test_ac_5(self):
state = main(nelems=16, degree=2, freq=1000, nturns=5)
with self.subTest('A.imag'): self.assertAlmostEqual64(state['A'].imag, '''
Expand Down
2 changes: 0 additions & 2 deletions examples/cylinderflow.py
Original file line number Diff line number Diff line change
Expand Up @@ -129,7 +129,6 @@ def main(nelems:int, degree:int, reynolds:float, rotation:float, timestep:float,

class test(testing.TestCase):

@testing.requires('matplotlib', 'scipy')
def test_rot0(self):
state0, state = main(nelems=6, degree=3, reynolds=100, rotation=0, timestep=.1, maxradius=25, seed=0, endtime=.05)
with self.subTest('initial condition'): self.assertAlmostEqual64(state0['u'], '''
Expand All @@ -144,7 +143,6 @@ def test_rot0(self):
eNoBSAC3/4zF18aozR866DpHNSk8JDonOdw4k8VzNaHBk8PFOyI+Gj9vPPRA/T/LQDtBIECaP0i5yLsA
wL9FwkabQsJJTbc2ubJHw7ZvRq/qITA=''')

@testing.requires('matplotlib', 'scipy')
def test_rot1(self):
state0, state = main(nelems=6, degree=3, reynolds=100, rotation=1, timestep=.1, maxradius=25, seed=0, endtime=.05)
with self.subTest('initial condition'): self.assertAlmostEqual64(state0['u'], '''
Expand Down
2 changes: 0 additions & 2 deletions examples/drivencavity-compatible.py
Original file line number Diff line number Diff line change
Expand Up @@ -111,7 +111,6 @@ def postprocess(domain, ns, every=.05, spacing=.01, **arguments):

class test(testing.TestCase):

@testing.requires('matplotlib')
def test_p2(self):
state0, state1 = main(nelems=3, reynolds=100, degree=2)
with self.subTest('stokes-velocity'): self.assertAlmostEqual64(state0['u'], '''
Expand All @@ -125,7 +124,6 @@ def test_p2(self):
eNpbqpasrWa46TSTfoT+krO/de/pntA3Pnf2zFNtn2u2hglmAOKVDlE=''')
with self.subTest('navier-stokes-multiplier'): self.assertAlmostEqual(state1['lm'], 0)

@testing.requires('matplotlib')
def test_p3(self):
state0, state1 = main(nelems=3, reynolds=100, degree=3)
with self.subTest('stokes-velocity'): self.assertAlmostEqual64(state0['u'], '''
Expand Down
2 changes: 0 additions & 2 deletions examples/drivencavity.py
Original file line number Diff line number Diff line change
Expand Up @@ -106,7 +106,6 @@ def postprocess(domain, ns, every=.05, spacing=.01, **arguments):

class test(testing.TestCase):

@testing.requires('matplotlib')
def test_square(self):
state0, state1 = main(nelems=3, etype='square', reynolds=100, degree=3)
with self.subTest('stokes-velocity'): self.assertAlmostEqual64(state0['u'], '''
Expand All @@ -129,7 +128,6 @@ def test_square(self):
eNoNiT0OQEAYBdd5xD1cSOIMiIJGVJuIiliS9VNYKolkNG6j9BUvmZlnmJnoSAnx6RmFNSUVjgErRVOQ
iFtWKTUZMQ2n/BuGnJaFi52bl48D73Fis+wjCpT6AWgsRHE=''')

@testing.requires('matplotlib')
def test_mixed(self):
state0, state1 = main(nelems=3, etype='mixed', reynolds=100, degree=2)
with self.subTest('stokes-velocity'): self.assertAlmostEqual64(state0['u'], '''
Expand Down
4 changes: 0 additions & 4 deletions examples/elasticity.py
Original file line number Diff line number Diff line change
Expand Up @@ -70,7 +70,6 @@ def main(nelems:int, etype:str, btype:str, degree:int, poisson:float):

class test(testing.TestCase):

@testing.requires('matplotlib')
def test_default(self):
cons, lhs = main(nelems=4, etype='square', btype='std', degree=1, poisson=.25)
with self.subTest('constraints'): self.assertAlmostEqual64(cons, '''
Expand All @@ -79,7 +78,6 @@ def test_default(self):
eNpjYMAEKcaiRmLGQQZCxgwMYsbrzqcYvz672KTMaIKJimG7CQPDBJM75xabdJ3NMO0xSjG1MUw0Beox
PXIuw7Tk7A/TXqMfQLEfQLEfQLEfpsVnAUzzHtI=''')

@testing.requires('matplotlib')
def test_mixed(self):
cons, lhs = main(nelems=4, etype='mixed', btype='std', degree=1, poisson=.25)
with self.subTest('constraints'): self.assertAlmostEqual64(cons, '''
Expand All @@ -88,7 +86,6 @@ def test_mixed(self):
eNpjYICAJGMOI3ljcQMwx3i/JohSMr51HkQnGP8422eiYrjcJM+o3aToWq/Jy3PLTKafzTDtM0oxtTRM
MF2okmJ67lyGacnZH6aOhj9Mu41+mMZq/DA9dO6HaflZAAMdIls=''')

@testing.requires('matplotlib')
def test_quadratic(self):
cons, lhs = main(nelems=4, etype='square', btype='std', degree=2, poisson=.25)
with self.subTest('constraints'): self.assertAlmostEqual64(cons, '''
Expand All @@ -100,7 +97,6 @@ def test_quadratic(self):
PjER/0DIDAE/6ICVCjh2Id/ZiBdslY+LrpiOmLaYhJ90IibhNdcW0xHTFTPhUzPhX8h5W3rRuZicV1zO
N3bCgXRUeDFedjxvSc/ai/G86jzfWi87Xswfg5Nx3Q==''')

@testing.requires('matplotlib')
def test_poisson(self):
cons, lhs = main(nelems=4, etype='square', btype='std', degree=1, poisson=.4)
with self.subTest('constraints'): self.assertAlmostEqual64(cons, '''
Expand Down
3 changes: 0 additions & 3 deletions examples/finitestrain.py
Original file line number Diff line number Diff line change
Expand Up @@ -87,7 +87,6 @@ def main(nelems:int, etype:str, btype:str, degree:int, poisson:float, angle:floa

class test(testing.TestCase):

@testing.requires('matplotlib')
def test_default(self):
lhs0, lhs1 = main(nelems=4, etype='square', btype='std', degree=1, poisson=.25, angle=10, restol=1e-8, trim=False)
with self.subTest('linear'): self.assertAlmostEqual64(lhs0, '''
Expand All @@ -97,7 +96,6 @@ def test_default(self):
eNpjYMAEZdrKl2/p37soY1h84aKh2/lmI4Zz7loq5y0MD55rNtI652Rcefa48aUzzZcjzj4ylDjrYnz6
jIBJ8Zl2E9Yzty9InlE2+nB6o/HJ090my04rm7acBgAKcSdV''')

@testing.requires('matplotlib')
def test_mixed(self):
lhs0, lhs1 = main(nelems=4, etype='mixed', btype='std', degree=1, poisson=.25, angle=10, restol=1e-8, trim=False)
with self.subTest('linear'): self.assertAlmostEqual64(lhs0, '''
Expand All @@ -107,7 +105,6 @@ def test_mixed(self):
eNpjYIAA7fv2l6UMEi6C2H8N7l0A0VcMzc+D6H4jznPyhpfOdelwnm80EjznYTz57CnjG2eWX0o/+9VQ
+KyT8cUzzCbZZ2abiJ9RNvpw+vYFyTMbjU+e7jZZdlrZtOU0AJN4KHY=''')

@testing.requires('matplotlib')
def test_spline(self):
lhs0, lhs1 = main(nelems=4, etype='square', btype='spline', degree=2, poisson=.25, angle=10, restol=1e-8, trim=False)
with self.subTest('linear'): self.assertAlmostEqual64(lhs0, '''
Expand Down
3 changes: 0 additions & 3 deletions examples/laplace.py
Original file line number Diff line number Diff line change
Expand Up @@ -130,7 +130,6 @@ def main(nelems:int, etype:str, btype:str, degree:int):

class test(testing.TestCase):

@testing.requires('matplotlib')
def test_default(self):
cons, lhs, err = main(nelems=4, etype='square', btype='std', degree=1)
with self.subTest('constraints'): self.assertAlmostEqual64(cons, '''
Expand All @@ -141,7 +140,6 @@ def test_default(self):
with self.subTest('L2-error'):
self.assertAlmostEqual(err, 1.63e-3, places=5)

@testing.requires('matplotlib')
def test_spline(self):
cons, lhs, err = main(nelems=4, etype='square', btype='spline', degree=2)
with self.subTest('constraints'): self.assertAlmostEqual64(cons, '''
Expand All @@ -152,7 +150,6 @@ def test_spline(self):
with self.subTest('L2-error'):
self.assertAlmostEqual(err, 8.04e-5, places=7)

@testing.requires('matplotlib')
def test_mixed(self):
cons, lhs, err = main(nelems=4, etype='mixed', btype='std', degree=2)
with self.subTest('constraints'): self.assertAlmostEqual64(cons, '''
Expand Down
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